3 |
3.071e-06 |
0.003055 |
b2100 |
yegV |
-9.35 |
0.183884 |
5 -- 14 |
51 -- 60 |
putative kinase |
|
_____________4__________15\n_____________|__________|\n_______5'-AAUC__________CCUGU...CUU-3'\n______________GCUGCGCCGU\n______________||||||||||\n______________CGACGCGGCA\n3'-UUU...AGAAC__________UUUAA...GUG-5'\n_____________|__________|\n_____________61_________50\n |
8 -- 14 |
51 -- 57 |
-21.1769 kcal/mol |
6.95722 kcal/mol |
4.87294 kcal/mol |
4 15@LB@ | |@LB@ 5'-AAUC CCUGU...CUU-3'@LB@ GCUGCGCCGU@LB@ ||||||||||@LB@ CGACGCGGCA@LB@3'-UUU...AGAAC UUUAA...GUG-5'@LB@ | |@LB@ 61 50@LB@@LB@@LB@Energy -9.35 kcal/mol@LB@Hybridization Energy -21.1769 kcal/mol@LB@Unfolding Energy - mRNA 6.95722 kcal/mol@LB@Unfolding Energy - sRNA 4.87294 kcal/mol@LB@@LB@Position - mRNA 5 -- 14@LB@Position - sRNA 51 -- 60@LB@Position Seed - mRNA 8 -- 14@LB@Position Seed - sRNA 51 -- 57@LB@ |
16 |
0.0007867 |
0.1666 |
b2178 |
yejB |
-12.57 |
0.044336 |
179 -- 196 |
66 -- 82 |
microcin C ABC transporter permease |
|
_____________178________________197\n_____________|__________________|\n5'-UGG...CCGUC________AA________GUAGA...GUC-3'\n______________CGCCAGCA__CAGGGAGA\n______________|||||:||__||||||:|\n______________GCGGUUGU__GUCCCUUU\n3'-UUU...AUGAC________G_________AGAAC...GUG-5'\n_____________|__________________|\n_____________83_________________65\n |
190 -- 196 |
66 -- 72 |
-25.5869 kcal/mol |
5.97553 kcal/mol |
7.04029 kcal/mol |
178 197@LB@ | |@LB@5'-UGG...CCGUC AA GUAGA...GUC-3'@LB@ CGCCAGCA CAGGGAGA@LB@ |||||:|| ||||||:|@LB@ GCGGUUGU GUCCCUUU@LB@3'-UUU...AUGAC G AGAAC...GUG-5'@LB@ | |@LB@ 83 65@LB@@LB@@LB@Energy -12.57 kcal/mol@LB@Hybridization Energy -25.5869 kcal/mol@LB@Unfolding Energy - mRNA 5.97553 kcal/mol@LB@Unfolding Energy - sRNA 7.04029 kcal/mol@LB@@LB@Position - mRNA 179 -- 196@LB@Position - sRNA 66 -- 82@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 66 -- 72@LB@ |
136 |
0.007706 |
0.1993 |
b2188 |
yejM |
-8.60 |
0.250530 |
107 -- 119 |
70 -- 83 |
essential inner membrane DUF3413 domain-containing protein; lipid A production and membrane permeability factor |
|
_____________106____________120\n_____________|______________|\n5'-CGC...CCCCG______________CAAUU...UUG-3'\n______________GC_CCAACGCCAGG\n______________||_|||||:|||||\n______________CG_GGUUGUGGUCC\n3'-UUU...UAUGA__C___________CUUUA...GUG-5'\n_____________|______________|\n_____________84_____________69\n |
113 -- 119 |
70 -- 76 |
-22.9581 kcal/mol |
7.21499 kcal/mol |
7.14463 kcal/mol |
106 120@LB@ | |@LB@5'-CGC...CCCCG CAAUU...UUG-3'@LB@ GC CCAACGCCAGG@LB@ || |||||:|||||@LB@ CG GGUUGUGGUCC@LB@3'-UUU...UAUGA C CUUUA...GUG-5'@LB@ | |@LB@ 84 69@LB@@LB@@LB@Energy -8.60 kcal/mol@LB@Hybridization Energy -22.9581 kcal/mol@LB@Unfolding Energy - mRNA 7.21499 kcal/mol@LB@Unfolding Energy - sRNA 7.14463 kcal/mol@LB@@LB@Position - mRNA 107 -- 119@LB@Position - sRNA 70 -- 83@LB@Position Seed - mRNA 113 -- 119@LB@Position Seed - sRNA 70 -- 76@LB@ |
51 |
0.002608 |
0.1727 |
b2299 |
yfcD |
-9.22 |
0.194301 |
162 -- 171 |
49 -- 58 |
putative NUDIX hydrolase |
|
_____________161________172\n_____________|__________|\n5'-AGA...CAAAA__________GAGCG...AGU-3'\n______________UGCGCCGUAA\n______________||||||||||\n______________ACGCGGCAUU\n3'-UUU...AACCG__________UAAUA...GUG-5'\n_____________|__________|\n_____________59_________48\n |
165 -- 171 |
49 -- 55 |
-16.7903 kcal/mol |
2.6527 kcal/mol |
4.92198 kcal/mol |
161 172@LB@ | |@LB@5'-AGA...CAAAA GAGCG...AGU-3'@LB@ UGCGCCGUAA@LB@ ||||||||||@LB@ ACGCGGCAUU@LB@3'-UUU...AACCG UAAUA...GUG-5'@LB@ | |@LB@ 59 48@LB@@LB@@LB@Energy -9.22 kcal/mol@LB@Hybridization Energy -16.7903 kcal/mol@LB@Unfolding Energy - mRNA 2.6527 kcal/mol@LB@Unfolding Energy - sRNA 4.92198 kcal/mol@LB@@LB@Position - mRNA 162 -- 171@LB@Position - sRNA 49 -- 58@LB@Position Seed - mRNA 165 -- 171@LB@Position Seed - sRNA 49 -- 55@LB@ |
74 |
0.003792 |
0.1804 |
b2520 |
yfhM |
-12.28 |
0.050623 |
263 -- 298 |
53 -- 91 |
bacterial alpha2-macroglobulin colonization factor ECAM; anti-host protease defense factor; periplasmic inner membrane-anchored lipoprotein |
|
_____________262_____________________________________299\n_____________|_______________________________________|\n5'-CUC...AACAA___UA____________G___U____AAAGA________UU-3'\n______________CGA__AC_GCGCCAACA_CGG_GAAA_______UGCGCC\n______________|||__||_|||||||||_|:|_||||_______||||||\n______________GCU__UG_CGCGGUUGU_GUC_CUUU_______ACGCGG\n3'-UUU...CACGC___UA__A_________G___C____AGAACCG______CAUUU...GUG-5'\n_____________|_______________________________________|\n_____________92______________________________________52\n |
272 -- 278 |
75 -- 81 |
-39.9109 kcal/mol |
10.9563 kcal/mol |
16.677 kcal/mol |
262 299@LB@ | |@LB@5'-CUC...AACAA UA G U AAAGA UU-3'@LB@ CGA AC GCGCCAACA CGG GAAA UGCGCC@LB@ ||| || ||||||||| |:| |||| ||||||@LB@ GCU UG CGCGGUUGU GUC CUUU ACGCGG@LB@3'-UUU...CACGC UA A G C AGAACCG CAUUU...GUG-5'@LB@ | |@LB@ 92 52@LB@@LB@@LB@Energy -12.28 kcal/mol@LB@Hybridization Energy -39.9109 kcal/mol@LB@Unfolding Energy - mRNA 10.9563 kcal/mol@LB@Unfolding Energy - sRNA 16.677 kcal/mol@LB@@LB@Position - mRNA 263 -- 298@LB@Position - sRNA 53 -- 91@LB@Position Seed - mRNA 272 -- 278@LB@Position Seed - sRNA 75 -- 81@LB@ |
156 |
0.009123 |
0.2059 |
b2683 |
ygaH |
-13.79 |
0.025463 |
164 -- 213 |
27 -- 86 |
putative L-valine exporter norvaline resistance protein |
|
_____________163______________________________________________________________214\n_____________|________________________________________________________________|\n5'-AUU...GCCUC_________________CAU________AAGGA_____C_________________C_______UUCUG...CAA-3'\n______________ACUGCGUUAAU_CCAGG____UC_UGGC_____GCGCC____________GAUGAG_UAUGAGG\n______________||||||::||:_|||||____||_||||_____|||||____________||||||_||::|||\n______________UGACGCGGUUG_GGUCC____AG_ACCG_____CGCGG____________CUACUC_AUGUUCC\n3'-UUU...GCUUA___________U_____CUUU__A____A_________CAUUUAAUAAUA______A_______CGUGU...GUG-5'\n_____________|________________________________________________________________|\n_____________87_______________________________________________________________26\n |
207 -- 213 |
27 -- 33 |
-50.2075 kcal/mol |
19.3484 kcal/mol |
17.0667 kcal/mol |
163 214@LB@ | |@LB@5'-AUU...GCCUC CAU AAGGA C C UUCUG...CAA-3'@LB@ ACUGCGUUAAU CCAGG UC UGGC GCGCC GAUGAG UAUGAGG@LB@ ||||||::||: ||||| || |||| ||||| |||||| ||::|||@LB@ UGACGCGGUUG GGUCC AG ACCG CGCGG CUACUC AUGUUCC@LB@3'-UUU...GCUUA U CUUU A A CAUUUAAUAAUA A CGUGU...GUG-5'@LB@ | |@LB@ 87 26@LB@@LB@@LB@Energy -13.79 kcal/mol@LB@Hybridization Energy -50.2075 kcal/mol@LB@Unfolding Energy - mRNA 19.3484 kcal/mol@LB@Unfolding Energy - sRNA 17.0667 kcal/mol@LB@@LB@Position - mRNA 164 -- 213@LB@Position - sRNA 27 -- 86@LB@Position Seed - mRNA 207 -- 213@LB@Position Seed - sRNA 27 -- 33@LB@ |
126 |
0.006849 |
0.1914 |
b2930 |
yggF |
-13.28 |
0.032133 |
176 -- 191 |
68 -- 83 |
fructose 1 6 bisphosphatase isozyme |
|
_____________175______________192\n_____________|________________|\n5'-AUC...AUUUG________________GGCCG...GCC-3'\n______________GCGUUGAUAUCGGGGA\n______________|||:::|:|:|:||||\n______________CGCGGUUGUGGUCCCU\n3'-UUU...UAUGA________________UUAGA...GUG-5'\n_____________|________________|\n_____________84_______________67\n |
185 -- 191 |
68 -- 74 |
-24.7766 kcal/mol |
4.1491 kcal/mol |
7.34657 kcal/mol |
175 192@LB@ | |@LB@5'-AUC...AUUUG GGCCG...GCC-3'@LB@ GCGUUGAUAUCGGGGA@LB@ |||:::|:|:|:||||@LB@ CGCGGUUGUGGUCCCU@LB@3'-UUU...UAUGA UUAGA...GUG-5'@LB@ | |@LB@ 84 67@LB@@LB@@LB@Energy -13.28 kcal/mol@LB@Hybridization Energy -24.7766 kcal/mol@LB@Unfolding Energy - mRNA 4.1491 kcal/mol@LB@Unfolding Energy - sRNA 7.34657 kcal/mol@LB@@LB@Position - mRNA 176 -- 191@LB@Position - sRNA 68 -- 83@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 68 -- 74@LB@ |
125 |
0.006795 |
0.1914 |
b3003 |
yghA |
-11.52 |
0.071261 |
264 -- 274 |
70 -- 80 |
putative oxidoreductase |
b2902 |
_____________263_________275\n_____________|___________|\n5'-AAC...AACAA___________CAUCC...UAC-3'\n______________CCGACGCCAGG\n______________||:||:|||||\n______________GGUUGUGGUCC\n3'-UUU...GACGC___________CUUUA...GUG-5'\n_____________|___________|\n_____________81__________69\n |
268 -- 274 |
70 -- 76 |
-20.3781 kcal/mol |
2.1599 kcal/mol |
6.70146 kcal/mol |
263 275@LB@ | |@LB@5'-AAC...AACAA CAUCC...UAC-3'@LB@ CCGACGCCAGG@LB@ ||:||:|||||@LB@ GGUUGUGGUCC@LB@3'-UUU...GACGC CUUUA...GUG-5'@LB@ | |@LB@ 81 69@LB@@LB@@LB@Energy -11.52 kcal/mol@LB@Hybridization Energy -20.3781 kcal/mol@LB@Unfolding Energy - mRNA 2.1599 kcal/mol@LB@Unfolding Energy - sRNA 6.70146 kcal/mol@LB@@LB@Position - mRNA 264 -- 274@LB@Position - sRNA 70 -- 80@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 70 -- 76@LB@ |
11 |
0.0004411 |
0.1198 |
b3154 |
yhbP |
-10.16 |
0.129625 |
138 -- 186 |
18 -- 75 |
UPF0306 family protein |
|
_____________137_________________________________________________________187\n_____________|___________________________________________________________|\n5'-AAA...AAGAA_______U____AUC_U________CAU______________GU_____CC________AAAAG...UUU-3'\n______________ACCAGGG__GUC___G_CUGCGUCG___GUUA________AG___CAGG__CACAGUAU\n______________|||||||__:||___|_|||||:||___:|||________||___||:|__|||||:|:\n______________UGGUCCC__UAG___C_GACGCGGC___UAAU________UC___GUUC__GUGUCGUG\n3'-UUU...GGUUG_______UU___AAC__________AUU____AAUACUAC__AAU____CC________ACAAA...GUG-5'\n_____________|___________________________________________________________|\n_____________76__________________________________________________________17\n |
155 -- 161 |
52 -- 58 |
-41.8924 kcal/mol |
11.5669 kcal/mol |
20.1571 kcal/mol |
137 187@LB@ | |@LB@5'-AAA...AAGAA U AUC U CAU GU CC AAAAG...UUU-3'@LB@ ACCAGGG GUC G CUGCGUCG GUUA AG CAGG CACAGUAU@LB@ ||||||| :|| | |||||:|| :||| || ||:| |||||:|:@LB@ UGGUCCC UAG C GACGCGGC UAAU UC GUUC GUGUCGUG@LB@3'-UUU...GGUUG UU AAC AUU AAUACUAC AAU CC ACAAA...GUG-5'@LB@ | |@LB@ 76 17@LB@@LB@@LB@Energy -10.16 kcal/mol@LB@Hybridization Energy -41.8924 kcal/mol@LB@Unfolding Energy - mRNA 11.5669 kcal/mol@LB@Unfolding Energy - sRNA 20.1571 kcal/mol@LB@@LB@Position - mRNA 138 -- 186@LB@Position - sRNA 18 -- 75@LB@Position Seed - mRNA 155 -- 161@LB@Position Seed - sRNA 52 -- 58@LB@ |
86 |
0.004777 |
0.1855 |
b3157 |
yhbT |
-11.83 |
0.061936 |
277 -- 294 |
70 -- 85 |
SCP-2 sterol transfer family protein |
|
_____________276________________295\n_____________|__________________|\n5'-CUG...GCCAU________AA________UUCUUG-3'\n______________UUGCGCUA__ACGCCAGG\n______________:|||||:|__||:|||||\n______________GACGCGGU__UGUGGUCC\n3'-UUU...CUUAU__________________CUUUA...GUG-5'\n_____________|__________________|\n_____________86_________________69\n |
288 -- 294 |
70 -- 76 |
-24.8001 kcal/mol |
5.69349 kcal/mol |
7.27689 kcal/mol |
276 295@LB@ | |@LB@5'-CUG...GCCAU AA UUCUUG-3'@LB@ UUGCGCUA ACGCCAGG@LB@ :|||||:| ||:|||||@LB@ GACGCGGU UGUGGUCC@LB@3'-UUU...CUUAU CUUUA...GUG-5'@LB@ | |@LB@ 86 69@LB@@LB@@LB@Energy -11.83 kcal/mol@LB@Hybridization Energy -24.8001 kcal/mol@LB@Unfolding Energy - mRNA 5.69349 kcal/mol@LB@Unfolding Energy - sRNA 7.27689 kcal/mol@LB@@LB@Position - mRNA 277 -- 294@LB@Position - sRNA 70 -- 85@LB@Position Seed - mRNA 288 -- 294@LB@Position Seed - sRNA 70 -- 76@LB@ |