199 |
0.01101 |
0.197 |
stm3346 |
yhcM |
-12.83 |
0.254909 |
186 -- 228 |
33 -- 82 |
cell division protein ZapE |
|
_____________185____________________229\n_____________|______________________|\n5'-CAG...UUCAA_G__UA__________UAU___AAGCC...AAA-3'\n______________G_AA__ACAAUAACAU___GCA\n______________|_||__||||:||||:___:||\n______________C_UU__UGUUGUUGUG___UGU\n3'-UUU...GUUAA_G__UG__________U_____AGUGU...UCA-5'\n_____________|______________________|\n_____________83_____________________32\n |
193 -- 199 |
75 -- 81 |
-14.0954 kcal/mol |
2.45302 kcal/mol |
3.80671 kcal/mol |
185 229@LB@ | |@LB@5'-CAG...UUCAA G UA UAU AAGCC...AAA-3'@LB@ G AA ACAAUAACAU GCA@LB@ | || ||||:||||: :||@LB@ C UU UGUUGUUGUG UGU@LB@3'-UUU...GUUAA G UG U AGUGU...UCA-5'@LB@ | |@LB@ 83 32@LB@@LB@@LB@Energy -12.83 kcal/mol@LB@Hybridization Energy -14.0954 kcal/mol@LB@Unfolding Energy - mRNA 2.45302 kcal/mol@LB@Unfolding Energy - sRNA 3.80671 kcal/mol@LB@@LB@Position - mRNA 186 -- 228@LB@Position - sRNA 33 -- 82@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 75 -- 81@LB@ |
11 |
0.0001804 |
0.05681 |
stm0959 |
lrp |
-12.80 |
0.257711 |
163 -- 181 |
139 -- 159 |
leucine-responsive transcriptional regulator |
|
_____________162_______________________________________________182\n_____________|_________________________________________________|\n5'-UGA...AGAGU________A_____GA________UAC______ACAAUAAUAAU_____AUAGC...AGC-3'\n______________CAGGCAGG_GUAGG_____AGGAA___AGAGAG___________GGUAG\n______________|||:||||_|||::_____|||||___|:|:||___________|||||\n______________GUCUGUCC_CAUUU_____UCCUU___UUUUUC___________CCAUC\n3'-UUU...UACCU______________ACAUG_____CAC______________________AGAGC...UCA-5'\n_____________|_________________________________________________|\n_____________160_______________________________________________138\n |
163 -- 169 |
153 -- 159 |
-28.6161 kcal/mol |
5.81197 kcal/mol |
10.0349 kcal/mol |
162 182@LB@ | |@LB@5'-UGA...AGAGU A GA UAC ACAAUAAUAAU AUAGC...AGC-3'@LB@ CAGGCAGG GUAGG AGGAA AGAGAG GGUAG@LB@ |||:|||| |||:: ||||| |:|:|| |||||@LB@ GUCUGUCC CAUUU UCCUU UUUUUC CCAUC@LB@3'-UUU...UACCU ACAUG CAC AGAGC...UCA-5'@LB@ | |@LB@ 160 138@LB@@LB@@LB@Energy -12.80 kcal/mol@LB@Hybridization Energy -28.6161 kcal/mol@LB@Unfolding Energy - mRNA 5.81197 kcal/mol@LB@Unfolding Energy - sRNA 10.0349 kcal/mol@LB@@LB@Position - mRNA 163 -- 181@LB@Position - sRNA 139 -- 159@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 153 -- 159@LB@ |
152 |
0.008087 |
0.1845 |
stm0213 |
dapD |
-12.65 |
0.271269 |
222 -- 289 |
49 -- 104 |
2 3 4 5-tetrahydropyridine-2 6-dicarboxylate N-succinyltransferase |
|
_____________221______________________290\n_____________|________________________|\n5'-UUU...UUAAC_________GUU___G________UGAGA...AGG-3'\n______________AAUGCAGCA___ACA_AACGUUAU\n______________||::||:||___|||_|||:|:|:\n______________UUGUGUUGU___UGU_UUGUAGUG\n3'-UUU...AACGU_______________G________UUGGC...UCA-5'\n_____________|________________________|\n_____________105______________________48\n |
202 -- 208 |
79 -- 85 |
-17.6746 kcal/mol |
3.78795 kcal/mol |
5.3513 kcal/mol |
221 290@LB@ | |@LB@5'-UUU...UUAAC GUU G UGAGA...AGG-3'@LB@ AAUGCAGCA ACA AACGUUAU@LB@ ||::||:|| ||| |||:|:|:@LB@ UUGUGUUGU UGU UUGUAGUG@LB@3'-UUU...AACGU G UUGGC...UCA-5'@LB@ | |@LB@ 105 48@LB@@LB@@LB@Energy -12.65 kcal/mol@LB@Hybridization Energy -17.6746 kcal/mol@LB@Unfolding Energy - mRNA 3.78795 kcal/mol@LB@Unfolding Energy - sRNA 5.3513 kcal/mol@LB@@LB@Position - mRNA 222 -- 289@LB@Position - sRNA 49 -- 104@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 79 -- 85@LB@ |
174 |
0.009594 |
0.1945 |
stm1955 |
fliZ |
-12.61 |
0.274939 |
261 -- 282 |
33 -- 59 |
flagellar regulatory protein FliZ |
|
_____________260________________283\n_____________|__________________|\n5'-GCA...GACUU__________CA______UUGCG...ACC-3'\n______________UAAACACAGC__GACGCA\n______________:|||||||:|__:||:||\n______________GUUUGUGUUG__UUGUGU\n3'-UUU...UUAAC__________________UGUAG...UCA-5'\n_____________|__________________|\n_____________60_________________32\n |
257 -- 263 |
80 -- 86 |
-16.495 kcal/mol |
1.82497 kcal/mol |
3.72065 kcal/mol |
260 283@LB@ | |@LB@5'-GCA...GACUU CA UUGCG...ACC-3'@LB@ UAAACACAGC GACGCA@LB@ :|||||||:| :||:||@LB@ GUUUGUGUUG UUGUGU@LB@3'-UUU...UUAAC UGUAG...UCA-5'@LB@ | |@LB@ 60 32@LB@@LB@@LB@Energy -12.61 kcal/mol@LB@Hybridization Energy -16.495 kcal/mol@LB@Unfolding Energy - mRNA 1.82497 kcal/mol@LB@Unfolding Energy - sRNA 3.72065 kcal/mol@LB@@LB@Position - mRNA 261 -- 282@LB@Position - sRNA 33 -- 59@LB@Position Seed - mRNA 257 -- 263@LB@Position Seed - sRNA 80 -- 86@LB@ |
109 |
0.005328 |
0.1728 |
stm3082 |
N/A |
-12.60 |
0.275269 |
106 -- 154 |
38 -- 90 |
galactonate oxidoreductase |
|
_____________105________________________155\n_____________|__________________________|\n5'-AAU...ACAAC______UUUUUA_______UU_____GGCCU...CGG-3'\n______________GCAGAC______AACAACA__CAGCA\n______________|||:||______|||||||__||:||\n______________CGUUUG______UUGUUGU__GUUGU\n3'-UUU...GUUAA______UG__________________AGUGU...UCA-5'\n_____________|__________________________|\n_____________91_________________________37\n |
118 -- 124 |
76 -- 82 |
-16.9817 kcal/mol |
2.50135 kcal/mol |
3.80671 kcal/mol |
105 155@LB@ | |@LB@5'-AAU...ACAAC UUUUUA UU GGCCU...CGG-3'@LB@ GCAGAC AACAACA CAGCA@LB@ |||:|| ||||||| ||:||@LB@ CGUUUG UUGUUGU GUUGU@LB@3'-UUU...GUUAA UG AGUGU...UCA-5'@LB@ | |@LB@ 91 37@LB@@LB@@LB@Energy -12.60 kcal/mol@LB@Hybridization Energy -16.9817 kcal/mol@LB@Unfolding Energy - mRNA 2.50135 kcal/mol@LB@Unfolding Energy - sRNA 3.80671 kcal/mol@LB@@LB@Position - mRNA 106 -- 154@LB@Position - sRNA 38 -- 90@LB@Position Seed - mRNA 118 -- 124@LB@Position Seed - sRNA 76 -- 82@LB@ |
110 |
0.005337 |
0.1728 |
stm1920 |
cheW |
-12.58 |
0.277263 |
149 -- 192 |
51 -- 90 |
chemotaxis protein CheW |
|
_____________148__________193\n_____________|____________|\n5'-GUC...UGAUU____________AAUAA...UCC-3'\n______________GAGUGAGAAGGG\n______________:|||||:||:||\n______________UUCACUUUUUCC\n3'-UUU...UGUCC____________CAUCA...UCA-5'\n_____________|____________|\n_____________91___________50\n |
188 -- 194 |
128 -- 134 |
-15.4894 kcal/mol |
2.64754 kcal/mol |
3.77328 kcal/mol |
148 193@LB@ | |@LB@5'-GUC...UGAUU AAUAA...UCC-3'@LB@ GAGUGAGAAGGG@LB@ :|||||:||:||@LB@ UUCACUUUUUCC@LB@3'-UUU...UGUCC CAUCA...UCA-5'@LB@ | |@LB@ 91 50@LB@@LB@@LB@Energy -12.58 kcal/mol@LB@Hybridization Energy -15.4894 kcal/mol@LB@Unfolding Energy - mRNA 2.64754 kcal/mol@LB@Unfolding Energy - sRNA 3.77328 kcal/mol@LB@@LB@Position - mRNA 149 -- 192@LB@Position - sRNA 51 -- 90@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 128 -- 134@LB@ |
175 |
0.009595 |
0.1945 |
stm0268 |
N/A |
-12.50 |
0.284574 |
64 -- 117 |
80 -- 130 |
type VI secretion protein |
|
_____________63__________________________________________________________118\n_____________|___________________________________________________________|\n5'-GUU...CCGGC__________AUAACA______A__________AU________A______U________CGUAU...GAC-3'\n______________AGGGUAG_CU______CGCUAC____GUUUGAA__UCGCGGAC_AAUU_C_GACGCAGC\n______________|||||||_||______||||||____||:||||__||||:|||_||||_|_:||:||:|\n______________UCCCAUC_GA______GCGAUG____CAGACUU__AGCGUCUG_UUAA_G_UUGUGUUG\n3'-UUU...CUUUU_______A______________GCAC_________________G____C_U________UUGUG...UCA-5'\n_____________|___________________________________________________________|\n_____________131_________________________________________________________79\n |
111 -- 117 |
80 -- 86 |
-48.3519 kcal/mol |
16.091 kcal/mol |
19.1381 kcal/mol |
63 118@LB@ | |@LB@5'-GUU...CCGGC AUAACA A AU A U CGUAU...GAC-3'@LB@ AGGGUAG CU CGCUAC GUUUGAA UCGCGGAC AAUU C GACGCAGC@LB@ ||||||| || |||||| ||:|||| ||||:||| |||| | :||:||:|@LB@ UCCCAUC GA GCGAUG CAGACUU AGCGUCUG UUAA G UUGUGUUG@LB@3'-UUU...CUUUU A GCAC G C U UUGUG...UCA-5'@LB@ | |@LB@ 131 79@LB@@LB@@LB@Energy -12.50 kcal/mol@LB@Hybridization Energy -48.3519 kcal/mol@LB@Unfolding Energy - mRNA 16.091 kcal/mol@LB@Unfolding Energy - sRNA 19.1381 kcal/mol@LB@@LB@Position - mRNA 64 -- 117@LB@Position - sRNA 80 -- 130@LB@Position Seed - mRNA 111 -- 117@LB@Position Seed - sRNA 80 -- 86@LB@ |
171 |
0.009384 |
0.1945 |
stm1741 |
N/A |
-12.47 |
0.287408 |
104 -- 168 |
71 -- 131 |
transporter |
|
_____________103_________________________________________________________________________169\n_____________|___________________________________________________________________________|\n5'-GAG...CGACC____CU__________U______CA______UUC___CCUUAAA_______C___A___U_____G_________AUUCG...UGU-3'\n______________GGUG__GGAAGGG_AG_UUUCGC__UGCCGU___CUG_______GUAGACC_GUU_UAA_CGCAA_GGC_UGACA\n______________:|||__::|||||_||_|:||||__|:||||___|||_______|:|||||_:||_:||_|:|||_::|_::|||\n______________UCAC__UUUUCCC_UC_AGAGCG__AUGGCA___GAC_______CGUCUGG_UAA_GUU_GUGUU_UUG_GUUGU\n3'-UUU...GUCCU____U________A_________________CCA___UUAG__________U___C___U_____G___U_____AGUGU...UCA-5'\n_____________|___________________________________________________________________________|\n_____________132_________________________________________________________________________70\n |
139 -- 145 |
95 -- 101 |
-55.0636 kcal/mol |
20.4542 kcal/mol |
20.5091 kcal/mol |
103 169@LB@ | |@LB@5'-GAG...CGACC CU U CA UUC CCUUAAA C A U G AUUCG...UGU-3'@LB@ GGUG GGAAGGG AG UUUCGC UGCCGU CUG GUAGACC GUU UAA CGCAA GGC UGACA@LB@ :||| ::||||| || |:|||| |:|||| ||| |:||||| :|| :|| |:||| ::| ::|||@LB@ UCAC UUUUCCC UC AGAGCG AUGGCA GAC CGUCUGG UAA GUU GUGUU UUG GUUGU@LB@3'-UUU...GUCCU U A CCA UUAG U C U G U AGUGU...UCA-5'@LB@ | |@LB@ 132 70@LB@@LB@@LB@Energy -12.47 kcal/mol@LB@Hybridization Energy -55.0636 kcal/mol@LB@Unfolding Energy - mRNA 20.4542 kcal/mol@LB@Unfolding Energy - sRNA 20.5091 kcal/mol@LB@@LB@Position - mRNA 104 -- 168@LB@Position - sRNA 71 -- 131@LB@Position Seed - mRNA 139 -- 145@LB@Position Seed - sRNA 95 -- 101@LB@ |
127 |
0.006343 |
0.1774 |
stm1751 |
hns |
-12.42 |
0.292757 |
1 -- 14 |
147 -- 162 |
transcriptional regulator |
|
______________1_______________15\n______________|_______________|\n___________5'-________________AUCCC...UAG-3'\n______________GACAGAC__GGUGAGU\n______________|||||||__|||:|:|\n______________CUGUCUG__CCAUUUA\n3'-UUU...GAUAC_______UC_______CAUGU...UCA-5'\n_____________|________________|\n_____________163______________146\n |
8 -- 14 |
147 -- 153 |
-17.2475 kcal/mol |
3.56352 kcal/mol |
3.32093 kcal/mol |
1 15@LB@ | |@LB@ 5'- AUCCC...UAG-3'@LB@ GACAGAC GGUGAGU@LB@ ||||||| |||:|:|@LB@ CUGUCUG CCAUUUA@LB@3'-UUU...GAUAC UC CAUGU...UCA-5'@LB@ | |@LB@ 163 146@LB@@LB@@LB@Energy -12.42 kcal/mol@LB@Hybridization Energy -17.2475 kcal/mol@LB@Unfolding Energy - mRNA 3.56352 kcal/mol@LB@Unfolding Energy - sRNA 3.32093 kcal/mol@LB@@LB@Position - mRNA 1 -- 14@LB@Position - sRNA 147 -- 162@LB@Position Seed - mRNA 8 -- 14@LB@Position Seed - sRNA 147 -- 153@LB@ |
125 |
0.006333 |
0.1774 |
stm3094 |
yggJ |
-12.37 |
0.297521 |
35 -- 55 |
69 -- 89 |
putative cytoplasmic protein |
|
_____________34____________________56\n_____________|_____________________|\n5'-GCG...GCCAA__________UUUU_______UGGGA...AGA-3'\n______________CAAACGCAGC____UAACGUC\n______________|||||:||:|____:|||:||\n______________GUUUGUGUUG____GUUGUAG\n3'-UUU...UUAAC__________UUGU_______UGUUG...UCA-5'\n_____________|_____________________|\n_____________90____________________68\n |
49 -- 55 |
69 -- 75 |
-19.7914 kcal/mol |
1.34113 kcal/mol |
4.32311 kcal/mol |
34 56@LB@ | |@LB@5'-GCG...GCCAA UUUU UGGGA...AGA-3'@LB@ CAAACGCAGC UAACGUC@LB@ |||||:||:| :|||:||@LB@ GUUUGUGUUG GUUGUAG@LB@3'-UUU...UUAAC UUGU UGUUG...UCA-5'@LB@ | |@LB@ 90 68@LB@@LB@@LB@Energy -12.37 kcal/mol@LB@Hybridization Energy -19.7914 kcal/mol@LB@Unfolding Energy - mRNA 1.34113 kcal/mol@LB@Unfolding Energy - sRNA 4.32311 kcal/mol@LB@@LB@Position - mRNA 35 -- 55@LB@Position - sRNA 69 -- 89@LB@Position Seed - mRNA 49 -- 55@LB@Position Seed - sRNA 69 -- 75@LB@ |