161 |
0.01501 |
0.3104 |
b1709 |
btuD |
-8.32 |
0.227073 |
129 -- 137 |
1 -- 9 |
vitamin B12 ABC transporter ATPase |
|
_____________128_______138\n_____________|_________|\n5'-GCA...AUCCA_________CCCGG...GGC-3'\n______________GCGUUUUUC\n______________||||:||||\n______________CGCAGAAAG\n3'-UUU...UUACG_________-5'\n_____________|________|\n_____________10_______1\n |
131 -- 137 |
1 -- 7 |
-11.771 kcal/mol |
2.3321 kcal/mol |
1.11751 kcal/mol |
128 138@LB@ | |@LB@5'-GCA...AUCCA CCCGG...GGC-3'@LB@ GCGUUUUUC@LB@ ||||:||||@LB@ CGCAGAAAG@LB@3'-UUU...UUACG -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -8.32 kcal/mol@LB@Hybridization Energy -11.771 kcal/mol@LB@Unfolding Energy - mRNA 2.3321 kcal/mol@LB@Unfolding Energy - sRNA 1.11751 kcal/mol@LB@@LB@Position - mRNA 129 -- 137@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 131 -- 137@LB@Position Seed - sRNA 1 -- 7@LB@ |
162 |
0.01506 |
0.3104 |
b0871 |
poxB |
-6.02 |
0.481603 |
228 -- 255 |
23 -- 53 |
pyruvate dehydrogenase thiamine triphosphate-binding FAD-binding |
|
_____________227_______________________________256\n_____________|_________________________________|\n5'-CCG...AUAUC_____________________CGG_________AACGC...GUG-3'\n______________GCCAAAA___CA_CUC_GAAU___CAGGGGUGA\n______________|||||||___||_|||_||||___|||||:|||\n______________CGGUUUU___GU_GAG_CUUA___GUCCCUACU\n3'-UUU...CUCAC_______AAA__A___A____A___________ACUAU...AAG-5'\n_____________|_________________________________|\n_____________54________________________________22\n |
249 -- 255 |
23 -- 29 |
-28.0165 kcal/mol |
6.84512 kcal/mol |
15.1535 kcal/mol |
227 256@LB@ | |@LB@5'-CCG...AUAUC CGG AACGC...GUG-3'@LB@ GCCAAAA CA CUC GAAU CAGGGGUGA@LB@ ||||||| || ||| |||| |||||:|||@LB@ CGGUUUU GU GAG CUUA GUCCCUACU@LB@3'-UUU...CUCAC AAA A A A ACUAU...AAG-5'@LB@ | |@LB@ 54 22@LB@@LB@@LB@Energy -6.02 kcal/mol@LB@Hybridization Energy -28.0165 kcal/mol@LB@Unfolding Energy - mRNA 6.84512 kcal/mol@LB@Unfolding Energy - sRNA 15.1535 kcal/mol@LB@@LB@Position - mRNA 228 -- 255@LB@Position - sRNA 23 -- 53@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 23 -- 29@LB@ |
163 |
0.0151 |
0.3104 |
b1517 |
lsrF |
-8.60 |
0.205199 |
166 -- 179 |
8 -- 21 |
putative autoinducer-2 (AI-2) aldolase |
|
_____________165____________180\n_____________|______________|\n5'-AAA...AAUAC___UU_U_______AUUAC...AUU-3'\n______________GAU__C_GAUGUGC\n______________|||__|_:|||:||\n______________CUA__G_UUACGCG\n3'-UUU...UACUA___UU_U_______CAGAAAG-5'\n_____________|______________|\n_____________22_____________7\n |
173 -- 179 |
8 -- 14 |
-12.6785 kcal/mol |
2.84069 kcal/mol |
1.23638 kcal/mol |
165 180@LB@ | |@LB@5'-AAA...AAUAC UU U AUUAC...AUU-3'@LB@ GAU C GAUGUGC@LB@ ||| | :|||:||@LB@ CUA G UUACGCG@LB@3'-UUU...UACUA UU U CAGAAAG-5'@LB@ | |@LB@ 22 7@LB@@LB@@LB@Energy -8.60 kcal/mol@LB@Hybridization Energy -12.6785 kcal/mol@LB@Unfolding Energy - mRNA 2.84069 kcal/mol@LB@Unfolding Energy - sRNA 1.23638 kcal/mol@LB@@LB@Position - mRNA 166 -- 179@LB@Position - sRNA 8 -- 21@LB@Position Seed - mRNA 173 -- 179@LB@Position Seed - sRNA 8 -- 14@LB@ |
164 |
0.0157 |
0.3104 |
b1735 |
chbR |
-6.99 |
0.357617 |
139 -- 145 |
6 -- 12 |
repressor of chb operon for N N'-diacetylchitobiose utilization |
|
_____________138_____146\n_____________|_______|\n5'-GAU...AUGCU_______GAACU...CUG-3'\n______________UGCGCGU\n______________|||||||\n______________ACGCGCA\n3'-UUU...UGUUU_______GAAAG-5'\n_____________|_______|\n_____________13______5\n |
139 -- 145 |
6 -- 12 |
-12.5358 kcal/mol |
4.43858 kcal/mol |
1.10371 kcal/mol |
138 146@LB@ | |@LB@5'-GAU...AUGCU GAACU...CUG-3'@LB@ UGCGCGU@LB@ |||||||@LB@ ACGCGCA@LB@3'-UUU...UGUUU GAAAG-5'@LB@ | |@LB@ 13 5@LB@@LB@@LB@Energy -6.99 kcal/mol@LB@Hybridization Energy -12.5358 kcal/mol@LB@Unfolding Energy - mRNA 4.43858 kcal/mol@LB@Unfolding Energy - sRNA 1.10371 kcal/mol@LB@@LB@Position - mRNA 139 -- 145@LB@Position - sRNA 6 -- 12@LB@Position Seed - mRNA 139 -- 145@LB@Position Seed - sRNA 6 -- 12@LB@ |
165 |
0.01591 |
0.3104 |
b4393 |
trpR |
-12.13 |
0.051953 |
230 -- 246 |
5 -- 21 |
transcriptional repressor tryptophan-binding |
|
_____________229_______________247\n_____________|_________________|\n5'-GAG...GCAGC_________ACA_____ACCAG...AUC-3'\n______________GAUGGCAGA___GCGUC\n______________|||::||:|___|||||\n______________CUAUUGUUU___CGCAG\n3'-UUU...UACUA_________ACG_____AAAG-5'\n_____________|_________________|\n_____________22________________4\n |
232 -- 238 |
13 -- 19 |
-18.7652 kcal/mol |
5.38929 kcal/mol |
1.24955 kcal/mol |
229 247@LB@ | |@LB@5'-GAG...GCAGC ACA ACCAG...AUC-3'@LB@ GAUGGCAGA GCGUC@LB@ |||::||:| |||||@LB@ CUAUUGUUU CGCAG@LB@3'-UUU...UACUA ACG AAAG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -12.13 kcal/mol@LB@Hybridization Energy -18.7652 kcal/mol@LB@Unfolding Energy - mRNA 5.38929 kcal/mol@LB@Unfolding Energy - sRNA 1.24955 kcal/mol@LB@@LB@Position - mRNA 230 -- 246@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 232 -- 238@LB@Position Seed - sRNA 13 -- 19@LB@ |
166 |
0.01595 |
0.3104 |
b3560 |
glyQ |
-10.24 |
0.110293 |
22 -- 29 |
7 -- 14 |
glycine tRNA synthetase alpha subunit |
|
_____________21_______30\n_____________|________|\n5'-ACA...UAUGA________GUUAU...UGG-3'\n______________AAUGCGCG\n______________||||||||\n______________UUACGCGC\n3'-UUU...AUUGU________AGAAAG-5'\n_____________|________|\n_____________15_______6\n |
23 -- 29 |
7 -- 13 |
-12.7168 kcal/mol |
1.35517 kcal/mol |
1.11978 kcal/mol |
21 30@LB@ | |@LB@5'-ACA...UAUGA GUUAU...UGG-3'@LB@ AAUGCGCG@LB@ ||||||||@LB@ UUACGCGC@LB@3'-UUU...AUUGU AGAAAG-5'@LB@ | |@LB@ 15 6@LB@@LB@@LB@Energy -10.24 kcal/mol@LB@Hybridization Energy -12.7168 kcal/mol@LB@Unfolding Energy - mRNA 1.35517 kcal/mol@LB@Unfolding Energy - sRNA 1.11978 kcal/mol@LB@@LB@Position - mRNA 22 -- 29@LB@Position - sRNA 7 -- 14@LB@Position Seed - mRNA 23 -- 29@LB@Position Seed - sRNA 7 -- 13@LB@ |
167 |
0.01599 |
0.3104 |
b4220 |
tamA |
-9.57 |
0.142740 |
193 -- 207 |
4 -- 21 |
translocation and assembly module for autotransporter export outer membrane subunit |
|
_____________192________________208\n_____________|__________________|\n5'-CGC...UUCAG__GA______________AUAUC...GAC-3'\n______________GA____AAAUGUGCG_CU\n______________||____|||||:|||_||\n______________CU____UUUACGCGC_GA\n3'-UUU...UACUA__AUUG_________A__AAG-5'\n_____________|__________________|\n_____________22_________________3\n |
199 -- 205 |
7 -- 13 |
-13.0971 kcal/mol |
2.26836 kcal/mol |
1.2552 kcal/mol |
192 208@LB@ | |@LB@5'-CGC...UUCAG GA AUAUC...GAC-3'@LB@ GA AAAUGUGCG CU@LB@ || |||||:||| ||@LB@ CU UUUACGCGC GA@LB@3'-UUU...UACUA AUUG A AAG-5'@LB@ | |@LB@ 22 3@LB@@LB@@LB@Energy -9.57 kcal/mol@LB@Hybridization Energy -13.0971 kcal/mol@LB@Unfolding Energy - mRNA 2.26836 kcal/mol@LB@Unfolding Energy - sRNA 1.2552 kcal/mol@LB@@LB@Position - mRNA 193 -- 207@LB@Position - sRNA 4 -- 21@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 7 -- 13@LB@ |
168 |
0.01645 |
0.3104 |
b3720 |
bglH |
-8.64 |
0.202347 |
15 -- 28 |
9 -- 22 |
carbohydrate-specific outer membrane porin cryptic |
|
_____________14_____________29\n_____________|______________|\n5'-AUU...GAUCG_________UG___AAGGA...GCC-3'\n______________UGAUGAUAA__GCG\n______________||||:|:||__|||\n______________ACUAUUGUU__CGC\n3'-UUU...CUACU_________UA___GCAGAAAG-5'\n_____________|______________|\n_____________23_____________8\n |
17 -- 23 |
14 -- 20 |
-13.7208 kcal/mol |
3.8428 kcal/mol |
1.23827 kcal/mol |
14 29@LB@ | |@LB@5'-AUU...GAUCG UG AAGGA...GCC-3'@LB@ UGAUGAUAA GCG@LB@ ||||:|:|| |||@LB@ ACUAUUGUU CGC@LB@3'-UUU...CUACU UA GCAGAAAG-5'@LB@ | |@LB@ 23 8@LB@@LB@@LB@Energy -8.64 kcal/mol@LB@Hybridization Energy -13.7208 kcal/mol@LB@Unfolding Energy - mRNA 3.8428 kcal/mol@LB@Unfolding Energy - sRNA 1.23827 kcal/mol@LB@@LB@Position - mRNA 15 -- 28@LB@Position - sRNA 9 -- 22@LB@Position Seed - mRNA 17 -- 23@LB@Position Seed - sRNA 14 -- 20@LB@ |
169 |
0.01667 |
0.3104 |
b3575 |
yiaK |
-9.90 |
0.125874 |
198 -- 219 |
8 -- 29 |
2 3-diketo-L-gulonate reductase NADH-dependent |
|
_____________197____________________220\n_____________|______________________|\n5'-UUU...AGCCU_______AA______UU__A__AGUUA...UCG-3'\n______________GGGAUGA__GUGACA__UG_GC\n______________|||||||__:|:|||__||_||\n______________CCCUACU__UAUUGU__AC_CG\n3'-UUU...UAAGU_______AC______UU__G__CAGAAAG-5'\n_____________|______________________|\n_____________30_____________________7\n |
198 -- 204 |
23 -- 29 |
-23.0827 kcal/mol |
5.7681 kcal/mol |
7.41331 kcal/mol |
197 220@LB@ | |@LB@5'-UUU...AGCCU AA UU A AGUUA...UCG-3'@LB@ GGGAUGA GUGACA UG GC@LB@ ||||||| :|:||| || ||@LB@ CCCUACU UAUUGU AC CG@LB@3'-UUU...UAAGU AC UU G CAGAAAG-5'@LB@ | |@LB@ 30 7@LB@@LB@@LB@Energy -9.90 kcal/mol@LB@Hybridization Energy -23.0827 kcal/mol@LB@Unfolding Energy - mRNA 5.7681 kcal/mol@LB@Unfolding Energy - sRNA 7.41331 kcal/mol@LB@@LB@Position - mRNA 198 -- 219@LB@Position - sRNA 8 -- 29@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 23 -- 29@LB@ |
170 |
0.01687 |
0.3104 |
b0033 |
carB |
-11.35 |
0.071227 |
1 -- 15 |
5 -- 17 |
carbamoyl-phosphate synthase large subunit |
|
______________1______________16\n______________|______________|\n___________5'-_____CC________ACGCA...CGU-3'\n______________GCAAA__UGCGUGUC\n______________:||||__||||:|||\n______________UGUUU__ACGCGCAG\n3'-UUU...ACUAU_______________AAAG-5'\n_____________|_______________|\n_____________18______________4\n |
9 -- 15 |
5 -- 11 |
-15.984 kcal/mol |
3.41554 kcal/mol |
1.22241 kcal/mol |
1 16@LB@ | |@LB@ 5'- CC ACGCA...CGU-3'@LB@ GCAAA UGCGUGUC@LB@ :|||| ||||:|||@LB@ UGUUU ACGCGCAG@LB@3'-UUU...ACUAU AAAG-5'@LB@ | |@LB@ 18 4@LB@@LB@@LB@Energy -11.35 kcal/mol@LB@Hybridization Energy -15.984 kcal/mol@LB@Unfolding Energy - mRNA 3.41554 kcal/mol@LB@Unfolding Energy - sRNA 1.22241 kcal/mol@LB@@LB@Position - mRNA 1 -- 15@LB@Position - sRNA 5 -- 17@LB@Position Seed - mRNA 9 -- 15@LB@Position Seed - sRNA 5 -- 11@LB@ |