161 |
0.009429 |
0.2062 |
b1372 |
stfR |
-7.17 |
0.431291 |
283 -- 297 |
69 -- 83 |
Rac prophage; putative tail fiber protein |
b1547 |
_____________282_____________298\n_____________|_______________|\n5'-CAC...AAAAC__AA________C__UGG-3'\n______________GU__CAGCACCA_GG\n______________|:__||:|||||_||\n______________CG__GUUGUGGU_CC\n3'-UUU...UAUGA__CG________C__UUUAG...GUG-5'\n_____________|_______________|\n_____________84______________68\n |
288 -- 294 |
72 -- 78 |
-17.3245 kcal/mol |
2.81769 kcal/mol |
7.33837 kcal/mol |
282 298@LB@ | |@LB@5'-CAC...AAAAC AA C UGG-3'@LB@ GU CAGCACCA GG@LB@ |: ||:||||| ||@LB@ CG GUUGUGGU CC@LB@3'-UUU...UAUGA CG C UUUAG...GUG-5'@LB@ | |@LB@ 84 68@LB@@LB@@LB@Energy -7.17 kcal/mol@LB@Hybridization Energy -17.3245 kcal/mol@LB@Unfolding Energy - mRNA 2.81769 kcal/mol@LB@Unfolding Energy - sRNA 7.33837 kcal/mol@LB@@LB@Position - mRNA 283 -- 297@LB@Position - sRNA 69 -- 83@LB@Position Seed - mRNA 288 -- 294@LB@Position Seed - sRNA 72 -- 78@LB@ |
162 |
0.009519 |
0.2068 |
b4167 |
nnr |
-8.70 |
0.240671 |
167 -- 176 |
76 -- 85 |
bifunctional NAD(P)H-hydrate repair enzyme; C-terminal domain ADP-dependent (S)-NAD(P)H-hydrate dehydratase and N-terminal domain NAD(P)H-hydrate epimerase |
|
_____________166________177\n_____________|__________|\n5'-ACU...AUUUU__________UGAUU...UGC-3'\n______________UUGCGCUAAC\n______________:|||||:|||\n______________GACGCGGUUG\n3'-UUU...CUUAU__________UGGUC...GUG-5'\n_____________|__________|\n_____________86_________75\n |
170 -- 176 |
76 -- 82 |
-14.3794 kcal/mol |
0.586298 kcal/mol |
5.09564 kcal/mol |
166 177@LB@ | |@LB@5'-ACU...AUUUU UGAUU...UGC-3'@LB@ UUGCGCUAAC@LB@ :|||||:|||@LB@ GACGCGGUUG@LB@3'-UUU...CUUAU UGGUC...GUG-5'@LB@ | |@LB@ 86 75@LB@@LB@@LB@Energy -8.70 kcal/mol@LB@Hybridization Energy -14.3794 kcal/mol@LB@Unfolding Energy - mRNA 0.586298 kcal/mol@LB@Unfolding Energy - sRNA 5.09564 kcal/mol@LB@@LB@Position - mRNA 167 -- 176@LB@Position - sRNA 76 -- 85@LB@Position Seed - mRNA 170 -- 176@LB@Position Seed - sRNA 76 -- 82@LB@ |
163 |
0.009572 |
0.2068 |
b4126 |
yjdI |
-8.84 |
0.226749 |
182 -- 194 |
26 -- 41 |
putative 4Fe-4S mono-cluster protein |
|
_____________181______________195\n_____________|________________|\n5'-UAG...CAUAC_______A________AAGGU...GCG-3'\n______________UGAUGAG____GAGGG\n______________|||||||____:||||\n______________ACUACUC____UUCCC\n3'-UUU...AUAAU_______AAUG_____GUGUC...GUG-5'\n_____________|________________|\n_____________42_______________25\n |
182 -- 188 |
35 -- 41 |
-13.4129 kcal/mol |
1.87738 kcal/mol |
2.69216 kcal/mol |
181 195@LB@ | |@LB@5'-UAG...CAUAC A AAGGU...GCG-3'@LB@ UGAUGAG GAGGG@LB@ ||||||| :||||@LB@ ACUACUC UUCCC@LB@3'-UUU...AUAAU AAUG GUGUC...GUG-5'@LB@ | |@LB@ 42 25@LB@@LB@@LB@Energy -8.84 kcal/mol@LB@Hybridization Energy -13.4129 kcal/mol@LB@Unfolding Energy - mRNA 1.87738 kcal/mol@LB@Unfolding Energy - sRNA 2.69216 kcal/mol@LB@@LB@Position - mRNA 182 -- 194@LB@Position - sRNA 26 -- 41@LB@Position Seed - mRNA 182 -- 188@LB@Position Seed - sRNA 35 -- 41@LB@ |
164 |
0.009677 |
0.2068 |
b1956 |
yedQ |
-11.74 |
0.064514 |
187 -- 209 |
18 -- 41 |
putative membrane-anchored diguanylate cyclase |
|
_____________186______________________210\n_____________|________________________|\n5'-GAG...CAGGU________CGUC____________GAGAC...UAU-3'\n______________UGG_GAGU____AGGGUGCAGCAC\n______________||:_||||____||||::||||||\n______________ACU_CUCA____UCCCGUGUCGUG\n3'-UUU...AUAAU___A____AUGU____________ACAAA...GUG-5'\n_____________|________________________|\n_____________42_______________________17\n |
203 -- 209 |
18 -- 24 |
-27.1151 kcal/mol |
6.50018 kcal/mol |
8.87585 kcal/mol |
186 210@LB@ | |@LB@5'-GAG...CAGGU CGUC GAGAC...UAU-3'@LB@ UGG GAGU AGGGUGCAGCAC@LB@ ||: |||| ||||::||||||@LB@ ACU CUCA UCCCGUGUCGUG@LB@3'-UUU...AUAAU A AUGU ACAAA...GUG-5'@LB@ | |@LB@ 42 17@LB@@LB@@LB@Energy -11.74 kcal/mol@LB@Hybridization Energy -27.1151 kcal/mol@LB@Unfolding Energy - mRNA 6.50018 kcal/mol@LB@Unfolding Energy - sRNA 8.87585 kcal/mol@LB@@LB@Position - mRNA 187 -- 209@LB@Position - sRNA 18 -- 41@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 18 -- 24@LB@ |
165 |
0.009721 |
0.2068 |
b1475 |
fdnH |
-11.62 |
0.068172 |
63 -- 98 |
41 -- 76 |
formate dehydrogenase-N Fe-S (beta) subunit nitrate-inducible |
|
_____________62_____________________________________99\n_____________|______________________________________|\n5'-CGC...CAAUC________CU___GA__G__U___G______G______AUCGC...UUA-3'\n______________CACUGGGG___UU__GG_UG_CGC_CGUAAA__GUUAU\n______________|||::|||___|:__||_||_|||_||||||__:||||\n______________GUGGUCCC___AG__CC_AC_GCG_GCAUUU__UAAUA\n3'-UUU...CGGUU________UUU__AA__G_____________AA_____CUACU...GUG-5'\n_____________|______________________________________|\n_____________77_____________________________________40\n |
64 -- 70 |
69 -- 75 |
-31.0903 kcal/mol |
10.1186 kcal/mol |
9.35565 kcal/mol |
62 99@LB@ | |@LB@5'-CGC...CAAUC CU GA G U G G AUCGC...UUA-3'@LB@ CACUGGGG UU GG UG CGC CGUAAA GUUAU@LB@ |||::||| |: || || ||| |||||| :||||@LB@ GUGGUCCC AG CC AC GCG GCAUUU UAAUA@LB@3'-UUU...CGGUU UUU AA G AA CUACU...GUG-5'@LB@ | |@LB@ 77 40@LB@@LB@@LB@Energy -11.62 kcal/mol@LB@Hybridization Energy -31.0903 kcal/mol@LB@Unfolding Energy - mRNA 10.1186 kcal/mol@LB@Unfolding Energy - sRNA 9.35565 kcal/mol@LB@@LB@Position - mRNA 63 -- 98@LB@Position - sRNA 41 -- 76@LB@Position Seed - mRNA 64 -- 70@LB@Position Seed - sRNA 69 -- 75@LB@ |
166 |
0.009748 |
0.2068 |
b1261 |
trpB |
-12.89 |
0.038353 |
88 -- 97 |
52 -- 61 |
tryptophan synthase beta subunit |
|
_____________87_________98\n_____________|__________|\n5'-UGG...AAACC__________GACUU...UCA-3'\n______________GGCUGCGCCG\n______________||||||||||\n______________CCGACGCGGC\n3'-UUU...UAGAA__________AUUUA...GUG-5'\n_____________|__________|\n_____________62_________51\n |
91 -- 97 |
52 -- 58 |
-23.3299 kcal/mol |
5.56351 kcal/mol |
4.87533 kcal/mol |
87 98@LB@ | |@LB@5'-UGG...AAACC GACUU...UCA-3'@LB@ GGCUGCGCCG@LB@ ||||||||||@LB@ CCGACGCGGC@LB@3'-UUU...UAGAA AUUUA...GUG-5'@LB@ | |@LB@ 62 51@LB@@LB@@LB@Energy -12.89 kcal/mol@LB@Hybridization Energy -23.3299 kcal/mol@LB@Unfolding Energy - mRNA 5.56351 kcal/mol@LB@Unfolding Energy - sRNA 4.87533 kcal/mol@LB@@LB@Position - mRNA 88 -- 97@LB@Position - sRNA 52 -- 61@LB@Position Seed - mRNA 91 -- 97@LB@Position Seed - sRNA 52 -- 58@LB@ |
167 |
0.009922 |
0.2071 |
b0367 |
tauC |
-5.98 |
0.628340 |
152 -- 162 |
85 -- 95 |
taurine ABC transporter permease |
|
_____________151_________163\n_____________|___________|\n5'-AUA...CGCCA___________GUUUU...UUU-3'\n______________UGCGCGAAUAU\n______________||||||||||:\n______________ACGCGCUUAUG\n3'-UUU...GCCCC___________ACGCG...GUG-5'\n_____________|___________|\n_____________96__________84\n |
154 -- 160 |
87 -- 93 |
-16.0697 kcal/mol |
4.17782 kcal/mol |
5.90856 kcal/mol |
151 163@LB@ | |@LB@5'-AUA...CGCCA GUUUU...UUU-3'@LB@ UGCGCGAAUAU@LB@ ||||||||||:@LB@ ACGCGCUUAUG@LB@3'-UUU...GCCCC ACGCG...GUG-5'@LB@ | |@LB@ 96 84@LB@@LB@@LB@Energy -5.98 kcal/mol@LB@Hybridization Energy -16.0697 kcal/mol@LB@Unfolding Energy - mRNA 4.17782 kcal/mol@LB@Unfolding Energy - sRNA 5.90856 kcal/mol@LB@@LB@Position - mRNA 152 -- 162@LB@Position - sRNA 85 -- 95@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 87 -- 93@LB@ |
168 |
0.009959 |
0.2071 |
b0727 |
sucB |
-11.51 |
0.071542 |
30 -- 47 |
72 -- 88 |
dihydrolipoyltranssuccinase |
|
_____________29_________________48\n_____________|__________________|\n5'-CAG...GCAUG_______A__________UUUCC...GUG-3'\n______________GUACUGC_GCCAGCAUCA\n______________:||||||_||||:||:||\n______________UAUGACG_CGGUUGUGGU\n3'-UUU...GCGCU__________________CCCUU...GUG-5'\n_____________|__________________|\n_____________89_________________71\n |
38 -- 44 |
75 -- 81 |
-25.7274 kcal/mol |
6.97777 kcal/mol |
7.24148 kcal/mol |
29 48@LB@ | |@LB@5'-CAG...GCAUG A UUUCC...GUG-3'@LB@ GUACUGC GCCAGCAUCA@LB@ :|||||| ||||:||:||@LB@ UAUGACG CGGUUGUGGU@LB@3'-UUU...GCGCU CCCUU...GUG-5'@LB@ | |@LB@ 89 71@LB@@LB@@LB@Energy -11.51 kcal/mol@LB@Hybridization Energy -25.7274 kcal/mol@LB@Unfolding Energy - mRNA 6.97777 kcal/mol@LB@Unfolding Energy - sRNA 7.24148 kcal/mol@LB@@LB@Position - mRNA 30 -- 47@LB@Position - sRNA 72 -- 88@LB@Position Seed - mRNA 38 -- 44@LB@Position Seed - sRNA 75 -- 81@LB@ |
169 |
0.01004 |
0.2071 |
b2384 |
ypdE |
-12.38 |
0.048278 |
93 -- 137 |
31 -- 75 |
aminopeptidase |
b4305 b3898 |
_____________92______________________________________________138\n_____________|_______________________________________________|\n5'-AUU...UAUUU_______C__GGG____G_____AUCG___A_______C________CCCGC...UGC-3'\n______________GCCAGGG_AA____GGC_UGCGC____AAG_UGUUGUG_UG_GUUAC\n______________:||||||_||____|||_|||||____||:_|:||:||_||_|||||\n______________UGGUCCC_UU____CCG_ACGCG____UUU_AUAAUAC_AC_CAAUG\n3'-UUU...GGUUG_______U__AGAA_________GCA____A_______U__U_____UUCCC...GUG-5'\n_____________|_______________________________________________|\n_____________76______________________________________________30\n |
93 -- 99 |
69 -- 75 |
-40.1479 kcal/mol |
18.4667 kcal/mol |
9.29858 kcal/mol |
92 138@LB@ | |@LB@5'-AUU...UAUUU C GGG G AUCG A C CCCGC...UGC-3'@LB@ GCCAGGG AA GGC UGCGC AAG UGUUGUG UG GUUAC@LB@ :|||||| || ||| ||||| ||: |:||:|| || |||||@LB@ UGGUCCC UU CCG ACGCG UUU AUAAUAC AC CAAUG@LB@3'-UUU...GGUUG U AGAA GCA A U U UUCCC...GUG-5'@LB@ | |@LB@ 76 30@LB@@LB@@LB@Energy -12.38 kcal/mol@LB@Hybridization Energy -40.1479 kcal/mol@LB@Unfolding Energy - mRNA 18.4667 kcal/mol@LB@Unfolding Energy - sRNA 9.29858 kcal/mol@LB@@LB@Position - mRNA 93 -- 137@LB@Position - sRNA 31 -- 75@LB@Position Seed - mRNA 93 -- 99@LB@Position Seed - sRNA 69 -- 75@LB@ |
170 |
0.01004 |
0.2071 |
b3887 |
dtd |
-7.24 |
0.420466 |
57 -- 66 |
52 -- 62 |
D-tyr-tRNA(Tyr) deacylase |
|
_____________56__________67\n_____________|___________|\n5'-GGA...AUUUA___________GCGGU...UCG-3'\n______________UGG_UGUGCUG\n______________|||_||:||:|\n______________ACC_ACGCGGC\n3'-UUU...UUAGA___G_______AUUUA...GUG-5'\n_____________|___________|\n_____________63__________51\n |
60 -- 66 |
52 -- 58 |
-13.8062 kcal/mol |
1.68508 kcal/mol |
4.8804 kcal/mol |
56 67@LB@ | |@LB@5'-GGA...AUUUA GCGGU...UCG-3'@LB@ UGG UGUGCUG@LB@ ||| ||:||:|@LB@ ACC ACGCGGC@LB@3'-UUU...UUAGA G AUUUA...GUG-5'@LB@ | |@LB@ 63 51@LB@@LB@@LB@Energy -7.24 kcal/mol@LB@Hybridization Energy -13.8062 kcal/mol@LB@Unfolding Energy - mRNA 1.68508 kcal/mol@LB@Unfolding Energy - sRNA 4.8804 kcal/mol@LB@@LB@Position - mRNA 57 -- 66@LB@Position - sRNA 52 -- 62@LB@Position Seed - mRNA 60 -- 66@LB@Position Seed - sRNA 52 -- 58@LB@ |