63 |
0.003024 |
0.1596 |
stm3563 |
livH |
-16.49 |
0.067433 |
27 -- 175 |
36 -- 184 |
branched-chain amino acid ABC transporter permease LivH |
|
_____________26_____________176\n_____________|______________|\n5'-GAU...GAAAU______________CGAUC...ACG-3'\n______________GGGA_UGAAAAAGG\n______________||:|_|||||||||\n______________CCUU_ACUUUUUCC\n3'-UUU...CAUGU____C_________CAUCA...UCA-5'\n_____________|______________|\n_____________185____________35\n |
65 -- 71 |
128 -- 134 |
-14.2251 kcal/mol |
3.55711 kcal/mol |
3.77758 kcal/mol |
26 176@LB@ | |@LB@5'-GAU...GAAAU CGAUC...ACG-3'@LB@ GGGA UGAAAAAGG@LB@ ||:| |||||||||@LB@ CCUU ACUUUUUCC@LB@3'-UUU...CAUGU C CAUCA...UCA-5'@LB@ | |@LB@ 185 35@LB@@LB@@LB@Energy -16.49 kcal/mol@LB@Hybridization Energy -14.2251 kcal/mol@LB@Unfolding Energy - mRNA 3.55711 kcal/mol@LB@Unfolding Energy - sRNA 3.77758 kcal/mol@LB@@LB@Position - mRNA 27 -- 175@LB@Position - sRNA 36 -- 184@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 128 -- 134@LB@ |
4 |
5.758e-05 |
0.04123 |
stm3564 |
livK |
-17.90 |
0.039430 |
157 -- 215 |
37 -- 90 |
leucine ABC transporter subunit substrate-binding protein LivK |
|
_____________156______________________216\n_____________|________________________|\n5'-UUU...GCAAA_____A__________________AUGGG...CGA-3'\n______________AAACA_AAC_AUAUAACAUCACGA\n______________|||||_|||_|:|:||||||||:|\n______________UUUGU_UUG_UGUGUUGUAGUGUU\n3'-UUU...UAACG_____G___U______________GGCAU...UCA-5'\n_____________|________________________|\n_____________91_______________________36\n |
178 -- 184 |
65 -- 71 |
-21.8749 kcal/mol |
0.694231 kcal/mol |
6.38817 kcal/mol |
156 216@LB@ | |@LB@5'-UUU...GCAAA A AUGGG...CGA-3'@LB@ AAACA AAC AUAUAACAUCACGA@LB@ ||||| ||| |:|:||||||||:|@LB@ UUUGU UUG UGUGUUGUAGUGUU@LB@3'-UUU...UAACG G U GGCAU...UCA-5'@LB@ | |@LB@ 91 36@LB@@LB@@LB@Energy -17.90 kcal/mol@LB@Hybridization Energy -21.8749 kcal/mol@LB@Unfolding Energy - mRNA 0.694231 kcal/mol@LB@Unfolding Energy - sRNA 6.38817 kcal/mol@LB@@LB@Position - mRNA 157 -- 215@LB@Position - sRNA 37 -- 90@LB@Position Seed - mRNA 178 -- 184@LB@Position Seed - sRNA 65 -- 71@LB@ |
61 |
0.002902 |
0.1596 |
stm3567 |
livJ |
-18.03 |
0.037474 |
150 -- 196 |
40 -- 87 |
high-affinity branched-chain amino acid transporter |
|
_____________149_______________________197\n_____________|_________________________|\n5'-CGG...ACAAU_____C____________A______AGAAU...CCG-3'\n______________AACAC_ACAACACA_CGU_ACAACC\n______________|||||_||||||||_|:|_||||||\n______________UUGUG_UGUUGUGU_GUA_UGUUGG\n3'-UUU...AACGU_____U________U___G______CAUUC...UCA-5'\n_____________|_________________________|\n_____________88________________________39\n |
157 -- 163 |
74 -- 80 |
-27.1738 kcal/mol |
3.63117 kcal/mol |
8.28637 kcal/mol |
149 197@LB@ | |@LB@5'-CGG...ACAAU C A AGAAU...CCG-3'@LB@ AACAC ACAACACA CGU ACAACC@LB@ ||||| |||||||| |:| ||||||@LB@ UUGUG UGUUGUGU GUA UGUUGG@LB@3'-UUU...AACGU U U G CAUUC...UCA-5'@LB@ | |@LB@ 88 39@LB@@LB@@LB@Energy -18.03 kcal/mol@LB@Hybridization Energy -27.1738 kcal/mol@LB@Unfolding Energy - mRNA 3.63117 kcal/mol@LB@Unfolding Energy - sRNA 8.28637 kcal/mol@LB@@LB@Position - mRNA 150 -- 196@LB@Position - sRNA 40 -- 87@LB@Position Seed - mRNA 157 -- 163@LB@Position Seed - sRNA 74 -- 80@LB@ |
168 |
0.009144 |
0.1938 |
stm3609 |
yhjE |
-18.08 |
0.036777 |
202 -- 261 |
35 -- 91 |
MFS transporter |
|
_____________201__________________________________262\n_____________|____________________________________|\n5'-UAA...UAGUA_______A__C_____________U_____A_____AGGAA...UUG-3'\n______________UGCAAGC_AC_GC__CACAACA_C_CGACC_UGAGC\n______________|||||:|_||_:|__|||||||_|_|:|||_|:|||\n______________ACGUUUG_UG_UG__GUGUUGU_G_GUUGG_AUUCG\n3'-UUU...GGUUA__________U__UU_______A_U_____C_____GUUUU...UCA-5'\n_____________|____________________________________|\n_____________92___________________________________34\n |
215 -- 221 |
71 -- 77 |
-32.2191 kcal/mol |
4.27941 kcal/mol |
11.5198 kcal/mol |
201 262@LB@ | |@LB@5'-UAA...UAGUA A C U A AGGAA...UUG-3'@LB@ UGCAAGC AC GC CACAACA C CGACC UGAGC@LB@ |||||:| || :| ||||||| | |:||| |:|||@LB@ ACGUUUG UG UG GUGUUGU G GUUGG AUUCG@LB@3'-UUU...GGUUA U UU A U C GUUUU...UCA-5'@LB@ | |@LB@ 92 34@LB@@LB@@LB@Energy -18.08 kcal/mol@LB@Hybridization Energy -32.2191 kcal/mol@LB@Unfolding Energy - mRNA 4.27941 kcal/mol@LB@Unfolding Energy - sRNA 11.5198 kcal/mol@LB@@LB@Position - mRNA 202 -- 261@LB@Position - sRNA 35 -- 91@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 71 -- 77@LB@ |
159 |
0.008305 |
0.1845 |
stm3625 |
yhjV |
-13.06 |
0.235438 |
203 -- 240 |
55 -- 86 |
transporter |
|
_____________202________________________241\n_____________|__________________________|\n5'-UUA...UAUUU_____________CUCUA________CGACA...UCU-3'\n______________UGGGCAG__GGGG______UGCAGGA\n______________|||:|||__:|||______|:|||||\n______________ACCUGUC__UCCC______AUGUCCU\n3'-UUU...GUGAU_______UG____AUUUAC_______UCACU...UCA-5'\n_____________|__________________________|\n_____________87_________________________54\n |
202 -- 208 |
139 -- 145 |
-24.2103 kcal/mol |
7.6176 kcal/mol |
3.71206 kcal/mol |
202 241@LB@ | |@LB@5'-UUA...UAUUU CUCUA CGACA...UCU-3'@LB@ UGGGCAG GGGG UGCAGGA@LB@ |||:||| :||| |:|||||@LB@ ACCUGUC UCCC AUGUCCU@LB@3'-UUU...GUGAU UG AUUUAC UCACU...UCA-5'@LB@ | |@LB@ 87 54@LB@@LB@@LB@Energy -13.06 kcal/mol@LB@Hybridization Energy -24.2103 kcal/mol@LB@Unfolding Energy - mRNA 7.6176 kcal/mol@LB@Unfolding Energy - sRNA 3.71206 kcal/mol@LB@@LB@Position - mRNA 203 -- 240@LB@Position - sRNA 55 -- 86@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 139 -- 145@LB@ |
15 |
0.000269 |
0.06194 |
stm3630 |
dppA |
-21.81 |
0.008578 |
158 -- 199 |
51 -- 92 |
ABC transporter substrate-binding protein |
|
_____________157_____________________________________200\n_____________|_______________________________________|\n5'-AUU...AGCCU______AGG___A__________________________AGAAG...AUU-3'\n______________UUGCAA___GCA_AACAACAU_ACAUCACAAUUG_GAGC\n______________||||||___:||_|||||||:_|||||||||::|_:|||\n______________AACGUU___UGU_UUGUUGUG_UGUAGUGUUGGC_UUCG\n3'-UUU...UGGUU____________G________U____________A____GUUUU...UCA-5'\n_____________|_______________________________________|\n_____________93______________________________________50\n |
183 -- 189 |
63 -- 69 |
-36.2763 kcal/mol |
6.81868 kcal/mol |
11.5217 kcal/mol |
157 200@LB@ | |@LB@5'-AUU...AGCCU AGG A AGAAG...AUU-3'@LB@ UUGCAA GCA AACAACAU ACAUCACAAUUG GAGC@LB@ |||||| :|| |||||||: |||||||||::| :|||@LB@ AACGUU UGU UUGUUGUG UGUAGUGUUGGC UUCG@LB@3'-UUU...UGGUU G U A GUUUU...UCA-5'@LB@ | |@LB@ 93 50@LB@@LB@@LB@Energy -21.81 kcal/mol@LB@Hybridization Energy -36.2763 kcal/mol@LB@Unfolding Energy - mRNA 6.81868 kcal/mol@LB@Unfolding Energy - sRNA 11.5217 kcal/mol@LB@@LB@Position - mRNA 158 -- 199@LB@Position - sRNA 51 -- 92@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 63 -- 69@LB@ |
69 |
0.003278 |
0.1596 |
stm3675 |
sgbH |
-16.55 |
0.065932 |
154 -- 200 |
33 -- 93 |
3-keto-L-gulonate-6-phosphate decarboxylase |
|
_____________153_______________________201\n_____________|_________________________|\n5'-UUC...CAGUC__G_____GCC______________CCUGC...AGG-3'\n______________UG_AAGCA___CAACGCGAUGUCGC\n______________||_||:||___||||:|:|::||:|\n______________AC_UUUGU___GUUGUGUUGUAGUG\n3'-UUU...GGUUA__G_____GUU______________UUGGC...UCA-5'\n_____________|_________________________|\n_____________94________________________32\n |
258 -- 264 |
71 -- 77 |
-24.2274 kcal/mol |
7.7572 kcal/mol |
5.6854 kcal/mol |
153 201@LB@ | |@LB@5'-UUC...CAGUC G GCC CCUGC...AGG-3'@LB@ UG AAGCA CAACGCGAUGUCGC@LB@ || ||:|| ||||:|:|::||:|@LB@ AC UUUGU GUUGUGUUGUAGUG@LB@3'-UUU...GGUUA G GUU UUGGC...UCA-5'@LB@ | |@LB@ 94 32@LB@@LB@@LB@Energy -16.55 kcal/mol@LB@Hybridization Energy -24.2274 kcal/mol@LB@Unfolding Energy - mRNA 7.7572 kcal/mol@LB@Unfolding Energy - sRNA 5.6854 kcal/mol@LB@@LB@Position - mRNA 154 -- 200@LB@Position - sRNA 33 -- 93@LB@Position Seed - mRNA 258 -- 264@LB@Position Seed - sRNA 71 -- 77@LB@ |
41 |
0.001426 |
0.1215 |
stm3718 |
rfaI |
-15.09 |
0.114319 |
193 -- 209 |
157 -- 173 |
lipopolysaccharide 1 3-galactosyltransferase |
stm3717 |
_____________192_______________210\n_____________|_________________|\n5'-AUG...AAAAG___________A_____AAAUA...GGA-3'\n______________UGAUCACUAUG_GCAGA\n______________|:|||||||||_:||||\n______________AUUAGUGAUAC_UGUCU\n3'-UUU...AUGUA___________C_____GUCCC...UCA-5'\n_____________|_________________|\n_____________174_______________156\n |
197 -- 203 |
163 -- 169 |
-20.9664 kcal/mol |
2.81615 kcal/mol |
3.98136 kcal/mol |
192 210@LB@ | |@LB@5'-AUG...AAAAG A AAAUA...GGA-3'@LB@ UGAUCACUAUG GCAGA@LB@ |:||||||||| :||||@LB@ AUUAGUGAUAC UGUCU@LB@3'-UUU...AUGUA C GUCCC...UCA-5'@LB@ | |@LB@ 174 156@LB@@LB@@LB@Energy -15.09 kcal/mol@LB@Hybridization Energy -20.9664 kcal/mol@LB@Unfolding Energy - mRNA 2.81615 kcal/mol@LB@Unfolding Energy - sRNA 3.98136 kcal/mol@LB@@LB@Position - mRNA 193 -- 209@LB@Position - sRNA 157 -- 173@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 163 -- 169@LB@ |
193 |
0.01075 |
0.197 |
stm3734 |
rph |
-15.48 |
0.098722 |
165 -- 206 |
34 -- 78 |
ribonuclease PH |
|
_____________164____________________________207\n_____________|______________________________|\n5'-GCG...AUAAU_____________U___UUU__________AUCUC...GAG-3'\n______________GCGCAGC__CACA_UCG___UAAGCCGGAG\n______________:|:||:|__||||_:||___||||||::|:\n______________UGUGUUG__GUGU_GGC___AUUCGGUUUU\n3'-UUU...GUUGU_______UA____U________________CGGGU...UCA-5'\n_____________|______________________________|\n_____________79_____________________________33\n |
183 -- 189 |
55 -- 61 |
-24.9708 kcal/mol |
4.11178 kcal/mol |
11.3295 kcal/mol |
164 207@LB@ | |@LB@5'-GCG...AUAAU U UUU AUCUC...GAG-3'@LB@ GCGCAGC CACA UCG UAAGCCGGAG@LB@ :|:||:| |||| :|| ||||||::|:@LB@ UGUGUUG GUGU GGC AUUCGGUUUU@LB@3'-UUU...GUUGU UA U CGGGU...UCA-5'@LB@ | |@LB@ 79 33@LB@@LB@@LB@Energy -15.48 kcal/mol@LB@Hybridization Energy -24.9708 kcal/mol@LB@Unfolding Energy - mRNA 4.11178 kcal/mol@LB@Unfolding Energy - sRNA 11.3295 kcal/mol@LB@@LB@Position - mRNA 165 -- 206@LB@Position - sRNA 34 -- 78@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 55 -- 61@LB@ |
154 |
0.008185 |
0.1845 |
stm3738 |
yigC |
-11.16 |
0.433331 |
228 -- 246 |
55 -- 74 |
similar to E. coli orf hypothetical protein (AAC76670.1); Blastp hit to AAC76670.1 (223 aa) 94% identity in aa 19 - 223 |
|
_____________227__________________247\n_____________|____________________|\n5'-UAA...ACCUC_____________AC_____AAAUG...UUA-3'\n______________GCA__UACAAUAA__CACAA\n______________|||__:||||:||__|||||\n______________CGU__GUGUUGUU__GUGUU\n3'-UUU...GUUAA___UU_______________GUAGU...UCA-5'\n_____________|____________________|\n_____________75___________________54\n |
27 -- 33 |
78 -- 84 |
-12.6647 kcal/mol |
0.985902 kcal/mol |
3.77104 kcal/mol |
227 247@LB@ | |@LB@5'-UAA...ACCUC AC AAAUG...UUA-3'@LB@ GCA UACAAUAA CACAA@LB@ ||| :||||:|| |||||@LB@ CGU GUGUUGUU GUGUU@LB@3'-UUU...GUUAA UU GUAGU...UCA-5'@LB@ | |@LB@ 75 54@LB@@LB@@LB@Energy -11.16 kcal/mol@LB@Hybridization Energy -12.6647 kcal/mol@LB@Unfolding Energy - mRNA 0.985902 kcal/mol@LB@Unfolding Energy - sRNA 3.77104 kcal/mol@LB@@LB@Position - mRNA 228 -- 246@LB@Position - sRNA 55 -- 74@LB@Position Seed - mRNA 27 -- 33@LB@Position Seed - sRNA 78 -- 84@LB@ |