148 |
0.01421 |
0.3104 |
b2379 |
alaC |
-8.54 |
0.209762 |
290 -- 297 |
5 -- 12 |
glutamate-pyruvate aminotransferase; glutamic-pyruvic transaminase (GPT); alanine transaminase |
|
_____________289______298\n_____________|________|\n5'-UGU...AUGGC________GGC-3'\n______________UGCGCGUC\n______________||||||||\n______________ACGCGCAG\n3'-UUU...UGUUU________AAAG-5'\n_____________|________|\n_____________13_______4\n |
291 -- 297 |
5 -- 11 |
-14.909 kcal/mol |
5.25295 kcal/mol |
1.11508 kcal/mol |
289 298@LB@ | |@LB@5'-UGU...AUGGC GGC-3'@LB@ UGCGCGUC@LB@ ||||||||@LB@ ACGCGCAG@LB@3'-UUU...UGUUU AAAG-5'@LB@ | |@LB@ 13 4@LB@@LB@@LB@Energy -8.54 kcal/mol@LB@Hybridization Energy -14.909 kcal/mol@LB@Unfolding Energy - mRNA 5.25295 kcal/mol@LB@Unfolding Energy - sRNA 1.11508 kcal/mol@LB@@LB@Position - mRNA 290 -- 297@LB@Position - sRNA 5 -- 12@LB@Position Seed - mRNA 291 -- 297@LB@Position Seed - sRNA 5 -- 11@LB@ |
103 |
0.01026 |
0.3104 |
b1083 |
flgL |
-8.46 |
0.215699 |
195 -- 209 |
5 -- 21 |
flagellar hook-filament junction protein |
|
_____________194_______________210\n_____________|_________________|\n5'-UUG...GGGGA______________U__AGUAC...GUA-3'\n______________GAUAA__GAUGCGU_UC\n______________|||||__:|||||:_||\n______________CUAUU__UUACGCG_AG\n3'-UUU...UACUA_____GU_______C__AAAG-5'\n_____________|_________________|\n_____________22________________4\n |
200 -- 206 |
8 -- 14 |
-13.0743 kcal/mol |
3.36074 kcal/mol |
1.24955 kcal/mol |
194 210@LB@ | |@LB@5'-UUG...GGGGA U AGUAC...GUA-3'@LB@ GAUAA GAUGCGU UC@LB@ ||||| :|||||: ||@LB@ CUAUU UUACGCG AG@LB@3'-UUU...UACUA GU C AAAG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -8.46 kcal/mol@LB@Hybridization Energy -13.0743 kcal/mol@LB@Unfolding Energy - mRNA 3.36074 kcal/mol@LB@Unfolding Energy - sRNA 1.24955 kcal/mol@LB@@LB@Position - mRNA 195 -- 209@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 8 -- 14@LB@ |
156 |
0.01464 |
0.3104 |
b4105 |
phnD |
-8.45 |
0.216438 |
196 -- 209 |
4 -- 18 |
phosphonate ABC transporter periplasmic binding protein |
|
_____________195_____________210\n_____________|_______________|\n5'-CCG...AGGAA________AA_____AAGAU...UGA-3'\n______________AACGAAUG__CG_CU\n______________|||:||||__||_||\n______________UUGUUUAC__GC_GA\n3'-UUU...UACUA________GC__A__AAG-5'\n_____________|_______________|\n_____________19______________3\n |
197 -- 203 |
11 -- 17 |
-10.9184 kcal/mol |
1.23392 kcal/mol |
1.22995 kcal/mol |
195 210@LB@ | |@LB@5'-CCG...AGGAA AA AAGAU...UGA-3'@LB@ AACGAAUG CG CU@LB@ |||:|||| || ||@LB@ UUGUUUAC GC GA@LB@3'-UUU...UACUA GC A AAG-5'@LB@ | |@LB@ 19 3@LB@@LB@@LB@Energy -8.45 kcal/mol@LB@Hybridization Energy -10.9184 kcal/mol@LB@Unfolding Energy - mRNA 1.23392 kcal/mol@LB@Unfolding Energy - sRNA 1.22995 kcal/mol@LB@@LB@Position - mRNA 196 -- 209@LB@Position - sRNA 4 -- 18@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 11 -- 17@LB@ |
132 |
0.01286 |
0.3104 |
b3176 |
glmM |
-8.35 |
0.224806 |
246 -- 258 |
8 -- 20 |
phosphoglucosamine mutase |
|
_____________245___________259\n_____________|_____________|\n5'-GUU...GUCGU____G________CGAUC...CGG-3'\n______________GUAG_GGAUGCGC\n______________:||:_::||||||\n______________UAUU_UUUACGCG\n3'-UUU...ACUAC____G________CAGAAAG-5'\n_____________|_____________|\n_____________21____________7\n |
252 -- 258 |
8 -- 14 |
-14.3134 kcal/mol |
4.73041 kcal/mol |
1.23367 kcal/mol |
245 259@LB@ | |@LB@5'-GUU...GUCGU G CGAUC...CGG-3'@LB@ GUAG GGAUGCGC@LB@ :||: ::||||||@LB@ UAUU UUUACGCG@LB@3'-UUU...ACUAC G CAGAAAG-5'@LB@ | |@LB@ 21 7@LB@@LB@@LB@Energy -8.35 kcal/mol@LB@Hybridization Energy -14.3134 kcal/mol@LB@Unfolding Energy - mRNA 4.73041 kcal/mol@LB@Unfolding Energy - sRNA 1.23367 kcal/mol@LB@@LB@Position - mRNA 246 -- 258@LB@Position - sRNA 8 -- 20@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 8 -- 14@LB@ |
161 |
0.01501 |
0.3104 |
b1709 |
btuD |
-8.32 |
0.227073 |
129 -- 137 |
1 -- 9 |
vitamin B12 ABC transporter ATPase |
|
_____________128_______138\n_____________|_________|\n5'-GCA...AUCCA_________CCCGG...GGC-3'\n______________GCGUUUUUC\n______________||||:||||\n______________CGCAGAAAG\n3'-UUU...UUACG_________-5'\n_____________|________|\n_____________10_______1\n |
131 -- 137 |
1 -- 7 |
-11.771 kcal/mol |
2.3321 kcal/mol |
1.11751 kcal/mol |
128 138@LB@ | |@LB@5'-GCA...AUCCA CCCGG...GGC-3'@LB@ GCGUUUUUC@LB@ ||||:||||@LB@ CGCAGAAAG@LB@3'-UUU...UUACG -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -8.32 kcal/mol@LB@Hybridization Energy -11.771 kcal/mol@LB@Unfolding Energy - mRNA 2.3321 kcal/mol@LB@Unfolding Energy - sRNA 1.11751 kcal/mol@LB@@LB@Position - mRNA 129 -- 137@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 131 -- 137@LB@Position Seed - sRNA 1 -- 7@LB@ |
87 |
0.008927 |
0.3104 |
b0195 |
tsaA |
-8.24 |
0.234029 |
220 -- 237 |
1 -- 18 |
tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase SAM-dependent |
|
_____________219________________238\n_____________|__________________|\n5'-GAA...GUUCG_______AG_____A___GCUCG...ACG-3'\n______________AGCAAAU__GCGUU_UUC\n______________|:|||||__||||:_|||\n______________UUGUUUA__CGCAG_AAG\n3'-UUU...UACUA_______CG_____A___-5'\n_____________|_________________|\n_____________19________________1\n |
220 -- 226 |
12 -- 18 |
-15.6275 kcal/mol |
6.14962 kcal/mol |
1.24077 kcal/mol |
219 238@LB@ | |@LB@5'-GAA...GUUCG AG A GCUCG...ACG-3'@LB@ AGCAAAU GCGUU UUC@LB@ |:||||| ||||: |||@LB@ UUGUUUA CGCAG AAG@LB@3'-UUU...UACUA CG A -5'@LB@ | |@LB@ 19 1@LB@@LB@@LB@Energy -8.24 kcal/mol@LB@Hybridization Energy -15.6275 kcal/mol@LB@Unfolding Energy - mRNA 6.14962 kcal/mol@LB@Unfolding Energy - sRNA 1.24077 kcal/mol@LB@@LB@Position - mRNA 220 -- 237@LB@Position - sRNA 1 -- 18@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 12 -- 18@LB@ |
182 |
0.01795 |
0.3104 |
b0403 |
malZ |
-8.22 |
0.235274 |
180 -- 211 |
10 -- 46 |
maltodextrin glucosidase |
|
_____________179_____________________________________212\n_____________|_______________________________________|\n5'-UUU...CAGAU_______A_____________AAUU______U_______AUGGC...AGC-3'\n______________UUUCAUC________CAGGGG____AUGAUG_UAAAUGC\n______________|||||||________|||||:____|||||:_:||||||\n______________AAAGUAG________GUCCCU____UACUAU_GUUUACG\n3'-UUU...GUUUU_______AGACUUAA______AC________U_______CGCAG...AAG-5'\n_____________|_______________________________________|\n_____________47______________________________________9\n |
205 -- 211 |
10 -- 16 |
-25.6812 kcal/mol |
8.00905 kcal/mol |
9.44998 kcal/mol |
179 212@LB@ | |@LB@5'-UUU...CAGAU A AAUU U AUGGC...AGC-3'@LB@ UUUCAUC CAGGGG AUGAUG UAAAUGC@LB@ ||||||| |||||: |||||: :||||||@LB@ AAAGUAG GUCCCU UACUAU GUUUACG@LB@3'-UUU...GUUUU AGACUUAA AC U CGCAG...AAG-5'@LB@ | |@LB@ 47 9@LB@@LB@@LB@Energy -8.22 kcal/mol@LB@Hybridization Energy -25.6812 kcal/mol@LB@Unfolding Energy - mRNA 8.00905 kcal/mol@LB@Unfolding Energy - sRNA 9.44998 kcal/mol@LB@@LB@Position - mRNA 180 -- 211@LB@Position - sRNA 10 -- 46@LB@Position Seed - mRNA 205 -- 211@LB@Position Seed - sRNA 10 -- 16@LB@ |
125 |
0.01241 |
0.3104 |
b0002 |
thrA |
-8.21 |
0.235915 |
191 -- 205 |
9 -- 21 |
Bifunctional aspartokinase/homoserine dehydrogenase 1 |
|
_____________190_____________206\n_____________|_______________|\n5'-CCA...AACGA________CC_____AGUGU...UGG-3'\n______________GGUAACAA__AUGCG\n______________|:||||||__|||||\n______________CUAUUGUU__UACGC\n3'-UUU...UACUA_______________GCAGAAAG-5'\n_____________|_______________|\n_____________22______________8\n |
192 -- 198 |
14 -- 20 |
-12.9357 kcal/mol |
3.48482 kcal/mol |
1.23627 kcal/mol |
190 206@LB@ | |@LB@5'-CCA...AACGA CC AGUGU...UGG-3'@LB@ GGUAACAA AUGCG@LB@ |:|||||| |||||@LB@ CUAUUGUU UACGC@LB@3'-UUU...UACUA GCAGAAAG-5'@LB@ | |@LB@ 22 8@LB@@LB@@LB@Energy -8.21 kcal/mol@LB@Hybridization Energy -12.9357 kcal/mol@LB@Unfolding Energy - mRNA 3.48482 kcal/mol@LB@Unfolding Energy - sRNA 1.23627 kcal/mol@LB@@LB@Position - mRNA 191 -- 205@LB@Position - sRNA 9 -- 21@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 14 -- 20@LB@ |
124 |
0.0124 |
0.3104 |
b1860 |
ruvB |
-8.20 |
0.236824 |
252 -- 265 |
8 -- 20 |
ATP-dependent DNA helicase component of RuvABC resolvasome |
|
_____________251____________266\n_____________|______________|\n5'-ACG...AAGAU_________C____CAUUC...GUC-3'\n______________GUAGCAGAU_GCGC\n______________:||:||:||_||||\n______________UAUUGUUUA_CGCG\n3'-UUU...ACUAC______________CAGAAAG-5'\n_____________|______________|\n_____________21_____________7\n |
252 -- 258 |
14 -- 20 |
-14.7986 kcal/mol |
5.36112 kcal/mol |
1.23367 kcal/mol |
251 266@LB@ | |@LB@5'-ACG...AAGAU C CAUUC...GUC-3'@LB@ GUAGCAGAU GCGC@LB@ :||:||:|| ||||@LB@ UAUUGUUUA CGCG@LB@3'-UUU...ACUAC CAGAAAG-5'@LB@ | |@LB@ 21 7@LB@@LB@@LB@Energy -8.20 kcal/mol@LB@Hybridization Energy -14.7986 kcal/mol@LB@Unfolding Energy - mRNA 5.36112 kcal/mol@LB@Unfolding Energy - sRNA 1.23367 kcal/mol@LB@@LB@Position - mRNA 252 -- 265@LB@Position - sRNA 8 -- 20@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 14 -- 20@LB@ |
72 |
0.006739 |
0.3087 |
b2520 |
yfhM |
-8.19 |
0.237735 |
190 -- 217 |
6 -- 30 |
bacterial alpha2-macroglobulin colonization factor ECAM; anti-host protease defense factor; periplasmic inner membrane-anchored lipoprotein |
|
_____________189__________________________218\n_____________|____________________________|\n5'-CUC...GUGGC________AAA____AA____UA_____AGCCG...CUU-3'\n______________AGGGAUGA___AUGA__AAGU__CGCGU\n______________||||||||___||:|__||:|__|||||\n______________UCCCUACU___UAUU__UUUA__GCGCA\n3'-UUU...UUAAG________AC_____G_____C______GAAAG-5'\n_____________|____________________________|\n_____________31___________________________5\n |
191 -- 197 |
23 -- 29 |
-19.496 kcal/mol |
3.87755 kcal/mol |
7.4255 kcal/mol |
189 218@LB@ | |@LB@5'-CUC...GUGGC AAA AA UA AGCCG...CUU-3'@LB@ AGGGAUGA AUGA AAGU CGCGU@LB@ |||||||| ||:| ||:| |||||@LB@ UCCCUACU UAUU UUUA GCGCA@LB@3'-UUU...UUAAG AC G C GAAAG-5'@LB@ | |@LB@ 31 5@LB@@LB@@LB@Energy -8.19 kcal/mol@LB@Hybridization Energy -19.496 kcal/mol@LB@Unfolding Energy - mRNA 3.87755 kcal/mol@LB@Unfolding Energy - sRNA 7.4255 kcal/mol@LB@@LB@Position - mRNA 190 -- 217@LB@Position - sRNA 6 -- 30@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 23 -- 29@LB@ |