25 |
0.0006298 |
0.08814 |
stm3161 |
metC |
-13.21 |
0.223681 |
190 -- 249 |
35 -- 90 |
cystathionine beta-lyase |
|
_____________189__________________250\n_____________|____________________|\n5'-CAA...AACUG_________G__________AAAAA...CAC-3'\n______________GUAAACGCA__GACGCAGCA\n______________|:||||:||__:||:||:||\n______________CGUUUGUGU__UUGUGUUGU\n3'-UUU...GUUAA_________UG_________AGUGU...UCA-5'\n_____________|____________________|\n_____________91___________________34\n |
243 -- 249 |
71 -- 77 |
-21.5854 kcal/mol |
5.07977 kcal/mol |
3.80671 kcal/mol |
189 250@LB@ | |@LB@5'-CAA...AACUG G AAAAA...CAC-3'@LB@ GUAAACGCA GACGCAGCA@LB@ |:||||:|| :||:||:||@LB@ CGUUUGUGU UUGUGUUGU@LB@3'-UUU...GUUAA UG AGUGU...UCA-5'@LB@ | |@LB@ 91 34@LB@@LB@@LB@Energy -13.21 kcal/mol@LB@Hybridization Energy -21.5854 kcal/mol@LB@Unfolding Energy - mRNA 5.07977 kcal/mol@LB@Unfolding Energy - sRNA 3.80671 kcal/mol@LB@@LB@Position - mRNA 190 -- 249@LB@Position - sRNA 35 -- 90@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 71 -- 77@LB@ |
195 |
0.01085 |
0.197 |
stm0549 |
fimZ |
-13.17 |
0.226725 |
219 -- 235 |
155 -- 171 |
DNA-binding response regulator |
|
_____________218___________236\n_____________|_____________|\n5'-CAG...CUGUU_____________AACAC...UGA-3'\n______________AUCAUUAUGGACG\n______________||||:|||||||:\n______________UAGUGAUACCUGU\n3'-UUU...GUAAU_____________CUGUC...UCA-5'\n_____________|_____________|\n_____________172___________154\n |
225 -- 231 |
159 -- 165 |
-17.3187 kcal/mol |
3.33371 kcal/mol |
3.42647 kcal/mol |
218 236@LB@ | |@LB@5'-CAG...CUGUU AACAC...UGA-3'@LB@ AUCAUUAUGGACG@LB@ ||||:|||||||:@LB@ UAGUGAUACCUGU@LB@3'-UUU...GUAAU CUGUC...UCA-5'@LB@ | |@LB@ 172 154@LB@@LB@@LB@Energy -13.17 kcal/mol@LB@Hybridization Energy -17.3187 kcal/mol@LB@Unfolding Energy - mRNA 3.33371 kcal/mol@LB@Unfolding Energy - sRNA 3.42647 kcal/mol@LB@@LB@Position - mRNA 219 -- 235@LB@Position - sRNA 155 -- 171@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 159 -- 165@LB@ |
159 |
0.008305 |
0.1845 |
stm3625 |
yhjV |
-13.06 |
0.235438 |
203 -- 240 |
55 -- 86 |
transporter |
|
_____________202________________________241\n_____________|__________________________|\n5'-UUA...UAUUU_____________CUCUA________CGACA...UCU-3'\n______________UGGGCAG__GGGG______UGCAGGA\n______________|||:|||__:|||______|:|||||\n______________ACCUGUC__UCCC______AUGUCCU\n3'-UUU...GUGAU_______UG____AUUUAC_______UCACU...UCA-5'\n_____________|__________________________|\n_____________87_________________________54\n |
202 -- 208 |
139 -- 145 |
-24.2103 kcal/mol |
7.6176 kcal/mol |
3.71206 kcal/mol |
202 241@LB@ | |@LB@5'-UUA...UAUUU CUCUA CGACA...UCU-3'@LB@ UGGGCAG GGGG UGCAGGA@LB@ |||:||| :||| |:|||||@LB@ ACCUGUC UCCC AUGUCCU@LB@3'-UUU...GUGAU UG AUUUAC UCACU...UCA-5'@LB@ | |@LB@ 87 54@LB@@LB@@LB@Energy -13.06 kcal/mol@LB@Hybridization Energy -24.2103 kcal/mol@LB@Unfolding Energy - mRNA 7.6176 kcal/mol@LB@Unfolding Energy - sRNA 3.71206 kcal/mol@LB@@LB@Position - mRNA 203 -- 240@LB@Position - sRNA 55 -- 86@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 139 -- 145@LB@ |
133 |
0.006689 |
0.1774 |
stm0831 |
dps |
-13.05 |
0.236755 |
141 -- 176 |
159 -- 184 |
DNA starvation/stationary phase protection protein Dps |
|
_____________140________________________177\n_____________|__________________________|\n5'-CAU...UUACC___CA_______AACU__________AAUUG...UUA-3'\n______________CAC__AACAGCA____CGUC_UAACC\n______________|||__||||:||____|:||_:||||\n______________GUG__UUGUUGU____GUAG_GUUGG\n3'-UUU...CGUUU____________GUU_____U_____CAUUC...UCA-5'\n_____________|__________________________|\n_____________185________________________158\n |
37 -- 43 |
76 -- 82 |
-18.4678 kcal/mol |
1.39739 kcal/mol |
8.25195 kcal/mol |
140 177@LB@ | |@LB@5'-CAU...UUACC CA AACU AAUUG...UUA-3'@LB@ CAC AACAGCA CGUC UAACC@LB@ ||| ||||:|| |:|| :||||@LB@ GUG UUGUUGU GUAG GUUGG@LB@3'-UUU...CGUUU GUU U CAUUC...UCA-5'@LB@ | |@LB@ 185 158@LB@@LB@@LB@Energy -13.05 kcal/mol@LB@Hybridization Energy -18.4678 kcal/mol@LB@Unfolding Energy - mRNA 1.39739 kcal/mol@LB@Unfolding Energy - sRNA 8.25195 kcal/mol@LB@@LB@Position - mRNA 141 -- 176@LB@Position - sRNA 159 -- 184@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 76 -- 82@LB@ |
185 |
0.01043 |
0.1967 |
stm1700 |
fabI |
-13.03 |
0.238331 |
75 -- 107 |
38 -- 76 |
enoyl-[acyl-carrier-protein] reductase |
|
_____________74______________________________108\n_____________|_______________________________|\n5'-AGU...AGCGU____C______C___________________UAUAA...CUG-3'\n______________GACA_ACGGGG________CA_GGAGUGGGA\n______________||||_||:|||________||_|:||||::|\n______________CUGU_UGUCCC________GU_CUUCACUUU\n3'-UUU...GAUAC____C______AUUUACAU__C_________UUCCC...UCA-5'\n_____________|_______________________________|\n_____________77______________________________37\n |
96 -- 102 |
134 -- 140 |
-20.8604 kcal/mol |
6.05685 kcal/mol |
6.0649 kcal/mol |
74 108@LB@ | |@LB@5'-AGU...AGCGU C C UAUAA...CUG-3'@LB@ GACA ACGGGG CA GGAGUGGGA@LB@ |||| ||:||| || |:||||::|@LB@ CUGU UGUCCC GU CUUCACUUU@LB@3'-UUU...GAUAC C AUUUACAU C UUCCC...UCA-5'@LB@ | |@LB@ 77 37@LB@@LB@@LB@Energy -13.03 kcal/mol@LB@Hybridization Energy -20.8604 kcal/mol@LB@Unfolding Energy - mRNA 6.05685 kcal/mol@LB@Unfolding Energy - sRNA 6.0649 kcal/mol@LB@@LB@Position - mRNA 75 -- 107@LB@Position - sRNA 38 -- 76@LB@Position Seed - mRNA 96 -- 102@LB@Position Seed - sRNA 134 -- 140@LB@ |
179 |
0.009806 |
0.1951 |
stm3912 |
rep |
-13.00 |
0.240883 |
219 -- 287 |
22 -- 83 |
ATP-dependent DNA helicase Rep |
|
_____________218__________________________288\n_____________|____________________________|\n5'-AGU...UCCCA____UUUAAAUCCC______________CUGUC...CCA-3'\n______________UGCG__________GGC_CAACAACACG\n______________|||:__________::|_|||||||||:\n______________ACGU__________UUG_GUUGUUGUGU\n3'-UUU...GGUUA_________________U__________UGUAG...UCA-5'\n_____________|____________________________|\n_____________84___________________________21\n |
222 -- 228 |
74 -- 80 |
-15.5311 kcal/mol |
3.54327 kcal/mol |
3.73631 kcal/mol |
218 288@LB@ | |@LB@5'-AGU...UCCCA UUUAAAUCCC CUGUC...CCA-3'@LB@ UGCG GGC CAACAACACG@LB@ |||: ::| |||||||||:@LB@ ACGU UUG GUUGUUGUGU@LB@3'-UUU...GGUUA U UGUAG...UCA-5'@LB@ | |@LB@ 84 21@LB@@LB@@LB@Energy -13.00 kcal/mol@LB@Hybridization Energy -15.5311 kcal/mol@LB@Unfolding Energy - mRNA 3.54327 kcal/mol@LB@Unfolding Energy - sRNA 3.73631 kcal/mol@LB@@LB@Position - mRNA 219 -- 287@LB@Position - sRNA 22 -- 83@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 74 -- 80@LB@ |
190 |
0.01053 |
0.1967 |
stm4032 |
N/A |
-12.98 |
0.242168 |
37 -- 92 |
31 -- 85 |
lipase |
stm0490 |
_____________36__________________93\n_____________|___________________|\n5'-CUU...UCGCG____G______G_______GAGGG...GCU-3'\n______________AACA_AAUAUU_AUGACCG\n______________||||_||:||:_|::||||\n______________UUGU_UUGUAG_UGUUGGC\n3'-UUU...UGUUG____G______________AUUCG...UCA-5'\n_____________|___________________|\n_____________86__________________30\n |
283 -- 289 |
62 -- 68 |
-14.8704 kcal/mol |
1.51414 kcal/mol |
6.51321 kcal/mol |
36 93@LB@ | |@LB@5'-CUU...UCGCG G G GAGGG...GCU-3'@LB@ AACA AAUAUU AUGACCG@LB@ |||| ||:||: |::||||@LB@ UUGU UUGUAG UGUUGGC@LB@3'-UUU...UGUUG G AUUCG...UCA-5'@LB@ | |@LB@ 86 30@LB@@LB@@LB@Energy -12.98 kcal/mol@LB@Hybridization Energy -14.8704 kcal/mol@LB@Unfolding Energy - mRNA 1.51414 kcal/mol@LB@Unfolding Energy - sRNA 6.51321 kcal/mol@LB@@LB@Position - mRNA 37 -- 92@LB@Position - sRNA 31 -- 85@LB@Position Seed - mRNA 283 -- 289@LB@Position Seed - sRNA 62 -- 68@LB@ |
182 |
0.01014 |
0.1966 |
stm3011 |
galR |
-12.96 |
0.243649 |
22 -- 54 |
60 -- 90 |
transcriptional regulator GalR |
|
_____________21_________________________________________55\n_____________|__________________________________________|\n_________5'-AC____C____U____UGCCA______AAUC__________UU_GCAAA...GGC-3'\n______________CUGA_UCGC_GGCC_____GCAGAC____GCAACAGCGC__C\n______________||||_||||_|:||_____|||:||____:|||||:|:|__|\n______________GACU_AGCG_CUGG_____CGUUUG____UGUUGUUGUG__G\n3'-UUU...CACCA____U____U____UUAA_____________________UU_UAGUG...UCA-5'\n_____________|__________________________________________|\n_____________91_________________________________________59\n |
35 -- 41 |
75 -- 81 |
-39.0068 kcal/mol |
12.9734 kcal/mol |
13.5432 kcal/mol |
21 55@LB@ | |@LB@ 5'-AC C U UGCCA AAUC UU GCAAA...GGC-3'@LB@ CUGA UCGC GGCC GCAGAC GCAACAGCGC C@LB@ |||| |||| |:|| |||:|| :|||||:|:| |@LB@ GACU AGCG CUGG CGUUUG UGUUGUUGUG G@LB@3'-UUU...CACCA U U UUAA UU UAGUG...UCA-5'@LB@ | |@LB@ 91 59@LB@@LB@@LB@Energy -12.96 kcal/mol@LB@Hybridization Energy -39.0068 kcal/mol@LB@Unfolding Energy - mRNA 12.9734 kcal/mol@LB@Unfolding Energy - sRNA 13.5432 kcal/mol@LB@@LB@Position - mRNA 22 -- 54@LB@Position - sRNA 60 -- 90@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 75 -- 81@LB@ |
55 |
0.002114 |
0.1363 |
stm0887 |
artJ |
-12.89 |
0.249853 |
160 -- 177 |
72 -- 90 |
arginine ABC transporter substrate-binding protein |
|
_____________159_________________178\n_____________|___________________|\n5'-AUG...AUGCC___________________CAUAA...CGU-3'\n______________GCAGACACGGC_GCAUAAU\n______________|||:||||::|_:||:||:\n______________CGUUUGUGUUG_UGUGUUG\n3'-UUU...GUUAA___________U_______UAGUG...UCA-5'\n_____________|___________________|\n_____________91__________________71\n |
171 -- 177 |
72 -- 78 |
-21.0424 kcal/mol |
4.03353 kcal/mol |
3.80362 kcal/mol |
159 178@LB@ | |@LB@5'-AUG...AUGCC CAUAA...CGU-3'@LB@ GCAGACACGGC GCAUAAU@LB@ |||:||||::| :||:||:@LB@ CGUUUGUGUUG UGUGUUG@LB@3'-UUU...GUUAA U UAGUG...UCA-5'@LB@ | |@LB@ 91 71@LB@@LB@@LB@Energy -12.89 kcal/mol@LB@Hybridization Energy -21.0424 kcal/mol@LB@Unfolding Energy - mRNA 4.03353 kcal/mol@LB@Unfolding Energy - sRNA 3.80362 kcal/mol@LB@@LB@Position - mRNA 160 -- 177@LB@Position - sRNA 72 -- 90@LB@Position Seed - mRNA 171 -- 177@LB@Position Seed - sRNA 72 -- 78@LB@ |
148 |
0.007836 |
0.1845 |
stm2318 |
nuoL |
-12.84 |
0.254324 |
144 -- 178 |
37 -- 76 |
NADH-quinone oxidoreductase subunit L |
|
_____________143___________________179\n_____________|_____________________|\n5'-GGG...AGACC_____U____U__________UUCUC...UUG-3'\n______________GAUGG_CAGG___GAUGUACA\n______________||::|_||||___:|||||||\n______________CUGUC_GUCC___UUACAUGU\n3'-UUU...GAUAC_____U____CAU________CCUUC...UCA-5'\n_____________|_____________________|\n_____________77____________________36\n |
82 -- 88 |
142 -- 148 |
-19.9967 kcal/mol |
7.20144 kcal/mol |
3.50251 kcal/mol |
143 179@LB@ | |@LB@5'-GGG...AGACC U U UUCUC...UUG-3'@LB@ GAUGG CAGG GAUGUACA@LB@ ||::| |||| :|||||||@LB@ CUGUC GUCC UUACAUGU@LB@3'-UUU...GAUAC U CAU CCUUC...UCA-5'@LB@ | |@LB@ 77 36@LB@@LB@@LB@Energy -12.84 kcal/mol@LB@Hybridization Energy -19.9967 kcal/mol@LB@Unfolding Energy - mRNA 7.20144 kcal/mol@LB@Unfolding Energy - sRNA 3.50251 kcal/mol@LB@@LB@Position - mRNA 144 -- 178@LB@Position - sRNA 37 -- 76@LB@Position Seed - mRNA 82 -- 88@LB@Position Seed - sRNA 142 -- 148@LB@ |