159 |
0.008305 |
0.1845 |
stm3625 |
yhjV |
-13.06 |
0.235438 |
203 -- 240 |
55 -- 86 |
transporter |
|
_____________202________________________241\n_____________|__________________________|\n5'-UUA...UAUUU_____________CUCUA________CGACA...UCU-3'\n______________UGGGCAG__GGGG______UGCAGGA\n______________|||:|||__:|||______|:|||||\n______________ACCUGUC__UCCC______AUGUCCU\n3'-UUU...GUGAU_______UG____AUUUAC_______UCACU...UCA-5'\n_____________|__________________________|\n_____________87_________________________54\n |
202 -- 208 |
139 -- 145 |
-24.2103 kcal/mol |
7.6176 kcal/mol |
3.71206 kcal/mol |
202 241@LB@ | |@LB@5'-UUA...UAUUU CUCUA CGACA...UCU-3'@LB@ UGGGCAG GGGG UGCAGGA@LB@ |||:||| :||| |:|||||@LB@ ACCUGUC UCCC AUGUCCU@LB@3'-UUU...GUGAU UG AUUUAC UCACU...UCA-5'@LB@ | |@LB@ 87 54@LB@@LB@@LB@Energy -13.06 kcal/mol@LB@Hybridization Energy -24.2103 kcal/mol@LB@Unfolding Energy - mRNA 7.6176 kcal/mol@LB@Unfolding Energy - sRNA 3.71206 kcal/mol@LB@@LB@Position - mRNA 203 -- 240@LB@Position - sRNA 55 -- 86@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 139 -- 145@LB@ |
116 |
0.005629 |
0.1728 |
stm2662 |
rluD |
-17.46 |
0.046576 |
204 -- 257 |
36 -- 86 |
23S rRNA pseudouridine(1911/1915/1917) synthase |
|
_____________203____________________258\n_____________|______________________|\n5'-UGA...UAUAU__________G___________CGCAA...GUU-3'\n______________GGCACAACGA_UACAAC_UCAC\n______________::||||||:|_:|||||_||||\n______________UUGUGUUGUU_GUGUUG_AGUG\n3'-UUU...AACGU_________________U____UUGGC...UCA-5'\n_____________|______________________|\n_____________87_____________________35\n |
206 -- 212 |
78 -- 84 |
-22.2469 kcal/mol |
4.97176 kcal/mol |
5.3513 kcal/mol |
203 258@LB@ | |@LB@5'-UGA...UAUAU G CGCAA...GUU-3'@LB@ GGCACAACGA UACAAC UCAC@LB@ ::||||||:| :||||| ||||@LB@ UUGUGUUGUU GUGUUG AGUG@LB@3'-UUU...AACGU U UUGGC...UCA-5'@LB@ | |@LB@ 87 35@LB@@LB@@LB@Energy -17.46 kcal/mol@LB@Hybridization Energy -22.2469 kcal/mol@LB@Unfolding Energy - mRNA 4.97176 kcal/mol@LB@Unfolding Energy - sRNA 5.3513 kcal/mol@LB@@LB@Position - mRNA 204 -- 257@LB@Position - sRNA 36 -- 86@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 78 -- 84@LB@ |
94 |
0.0043 |
0.1596 |
stm3866 |
atpG |
-16.85 |
0.058909 |
206 -- 253 |
35 -- 80 |
F0F1 ATP synthase subunit gamma |
|
_____________205______________________254\n_____________|________________________|\n5'-GGU...CAAAA________AA_C______G_U___CGCCG...GUA-3'\n______________GAUCACUA__G_GAUGGA_A_GGU\n______________:|||||||__|_||::||_|_|||\n______________UUAGUGAU__C_CUGUCU_U_CCA\n3'-UUU...UGUAA________A_________G_C___UUUAC...UCA-5'\n_____________|________________________|\n_____________81_______________________34\n |
258 -- 264 |
165 -- 171 |
-17.4899 kcal/mol |
5.94142 kcal/mol |
3.53572 kcal/mol |
205 254@LB@ | |@LB@5'-GGU...CAAAA AA C G U CGCCG...GUA-3'@LB@ GAUCACUA G GAUGGA A GGU@LB@ :||||||| | ||::|| | |||@LB@ UUAGUGAU C CUGUCU U CCA@LB@3'-UUU...UGUAA A G C UUUAC...UCA-5'@LB@ | |@LB@ 81 34@LB@@LB@@LB@Energy -16.85 kcal/mol@LB@Hybridization Energy -17.4899 kcal/mol@LB@Unfolding Energy - mRNA 5.94142 kcal/mol@LB@Unfolding Energy - sRNA 3.53572 kcal/mol@LB@@LB@Position - mRNA 206 -- 253@LB@Position - sRNA 35 -- 80@LB@Position Seed - mRNA 258 -- 264@LB@Position Seed - sRNA 165 -- 171@LB@ |
14 |
0.0002233 |
0.05681 |
stm3843 |
trmE |
-16.53 |
0.066478 |
207 -- 249 |
37 -- 85 |
tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE |
|
_____________206______________250\n_____________|________________|\n5'-UGA...CAUGA________________UAUCG...CGC-3'\n______________GC___CAUAACGACAC\n______________||___||:|||:||||\n______________CG___GUGUUGUUGUG\n3'-UUU...GUUAA__UUU___________UUGUA...UCA-5'\n_____________|________________|\n_____________86_______________36\n |
211 -- 217 |
75 -- 81 |
-15.3625 kcal/mol |
2.22645 kcal/mol |
3.72363 kcal/mol |
206 250@LB@ | |@LB@5'-UGA...CAUGA UAUCG...CGC-3'@LB@ GC CAUAACGACAC@LB@ || ||:|||:||||@LB@ CG GUGUUGUUGUG@LB@3'-UUU...GUUAA UUU UUGUA...UCA-5'@LB@ | |@LB@ 86 36@LB@@LB@@LB@Energy -16.53 kcal/mol@LB@Hybridization Energy -15.3625 kcal/mol@LB@Unfolding Energy - mRNA 2.22645 kcal/mol@LB@Unfolding Energy - sRNA 3.72363 kcal/mol@LB@@LB@Position - mRNA 207 -- 249@LB@Position - sRNA 37 -- 85@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 75 -- 81@LB@ |
36 |
0.00125 |
0.1215 |
stm3523 |
glpR |
-16.55 |
0.065942 |
207 -- 266 |
37 -- 89 |
DeoR/GlpR family transcriptional regulator |
|
_____________206________________267\n_____________|__________________|\n5'-UUG...UGAAA__________________GCGAU...CGC-3'\n______________CAAACACAACGGCAUGAC\n______________||||||||||::||::||\n______________GUUUGUGUUGUUGUGUUG\n3'-UUU...UUAAC__________________UAGUG...UCA-5'\n_____________|__________________|\n_____________90_________________36\n |
218 -- 224 |
72 -- 78 |
-24.6143 kcal/mol |
5.8046 kcal/mol |
3.79561 kcal/mol |
206 267@LB@ | |@LB@5'-UUG...UGAAA GCGAU...CGC-3'@LB@ CAAACACAACGGCAUGAC@LB@ ||||||||||::||::||@LB@ GUUUGUGUUGUUGUGUUG@LB@3'-UUU...UUAAC UAGUG...UCA-5'@LB@ | |@LB@ 90 36@LB@@LB@@LB@Energy -16.55 kcal/mol@LB@Hybridization Energy -24.6143 kcal/mol@LB@Unfolding Energy - mRNA 5.8046 kcal/mol@LB@Unfolding Energy - sRNA 3.79561 kcal/mol@LB@@LB@Position - mRNA 207 -- 266@LB@Position - sRNA 37 -- 89@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 72 -- 78@LB@ |
135 |
0.006796 |
0.1774 |
stm1044 |
sodC |
-14.39 |
0.147293 |
208 -- 244 |
43 -- 78 |
Gifsy-2 prophage superoxide dismutase precursor (Cu-Zn) |
stm1440 stm0924 |
_____________207__________245\n_____________|____________|\n5'-GAA...GCUUU____________CAGGG...CCA-3'\n______________GGUGGUCUCGCU\n______________|||:||||||||\n______________CCAUCAGAGCGA\n3'-UUU...UUUUC____________UGGCA...UCA-5'\n_____________|____________|\n_____________79___________42\n |
78 -- 84 |
117 -- 123 |
-21.9622 kcal/mol |
4.44224 kcal/mol |
6.55795 kcal/mol |
207 245@LB@ | |@LB@5'-GAA...GCUUU CAGGG...CCA-3'@LB@ GGUGGUCUCGCU@LB@ |||:||||||||@LB@ CCAUCAGAGCGA@LB@3'-UUU...UUUUC UGGCA...UCA-5'@LB@ | |@LB@ 79 42@LB@@LB@@LB@Energy -14.39 kcal/mol@LB@Hybridization Energy -21.9622 kcal/mol@LB@Unfolding Energy - mRNA 4.44224 kcal/mol@LB@Unfolding Energy - sRNA 6.55795 kcal/mol@LB@@LB@Position - mRNA 208 -- 244@LB@Position - sRNA 43 -- 78@LB@Position Seed - mRNA 78 -- 84@LB@Position Seed - sRNA 117 -- 123@LB@ |
66 |
0.003179 |
0.1596 |
stm0264 |
dnaQ |
-14.69 |
0.132400 |
209 -- 271 |
35 -- 91 |
DNA polymerase III epsilon subunit |
|
_____________208__________________________________________272\n_____________|____________________________________________|\n5'-CGG...CGCAA______C__AAAU_______AU_______U___AUU________GAUUG...UCG-3'\n______________GUCUGA_AU____GACCGAU___GAGCAC_GCA___ACACGACA\n______________||||||_||____||||:||___:|:|||_:||___||||:|||\n______________CAGACU_UA____CUGGUUA___UUUGUG_UGU___UGUGUUGU\n3'-UUU...GGCAC_________GCGU_______ACG______U______________AGUGU...UCA-5'\n_____________|____________________________________________|\n_____________92___________________________________________34\n |
217 -- 223 |
71 -- 77 |
-33.8618 kcal/mol |
8.04508 kcal/mol |
13.5573 kcal/mol |
208 272@LB@ | |@LB@5'-CGG...CGCAA C AAAU AU U AUU GAUUG...UCG-3'@LB@ GUCUGA AU GACCGAU GAGCAC GCA ACACGACA@LB@ |||||| || ||||:|| :|:||| :|| ||||:|||@LB@ CAGACU UA CUGGUUA UUUGUG UGU UGUGUUGU@LB@3'-UUU...GGCAC GCGU ACG U AGUGU...UCA-5'@LB@ | |@LB@ 92 34@LB@@LB@@LB@Energy -14.69 kcal/mol@LB@Hybridization Energy -33.8618 kcal/mol@LB@Unfolding Energy - mRNA 8.04508 kcal/mol@LB@Unfolding Energy - sRNA 13.5573 kcal/mol@LB@@LB@Position - mRNA 209 -- 271@LB@Position - sRNA 35 -- 91@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 71 -- 77@LB@ |
191 |
0.01055 |
0.1967 |
stm0634 |
ybeF |
-18.83 |
0.027435 |
210 -- 262 |
35 -- 82 |
putative LysR family transcriptional regulator |
|
_____________209____________________________________________________________263\n_____________|______________________________________________________________|\n5'-GCU...CGUGA____UA_____C_G____AAAG_______________UCAACA____________AAC____AAUUU...UGU-3'\n______________GUGA__AUAAU_A_GCAG____ACAACCG___GCCGA______CCUA_CAGGACA___CGCA\n______________|::|__|:||:_|_:||:____|||||||___|||:|______||:|_|||:|||___||||\n______________CGUU__UGUUG_U_UGUU____UGUUGGC___CGGUU______GGGU_GUCUUGU___GCGU\n3'-UUU...GUUAA____UG_____U_G____GUAG_______AUU_____UUC_______A______________AAGGC...UCA-5'\n_____________|______________________________________________________________|\n_____________83_____________________________________________________________34\n |
227 -- 233 |
62 -- 68 |
-42.1612 kcal/mol |
9.04443 kcal/mol |
22.5095 kcal/mol |
209 263@LB@ | |@LB@5'-GCU...CGUGA UA C G AAAG UCAACA AAC AAUUU...UGU-3'@LB@ GUGA AUAAU A GCAG ACAACCG GCCGA CCUA CAGGACA CGCA@LB@ |::| |:||: | :||: ||||||| |||:| ||:| |||:||| ||||@LB@ CGUU UGUUG U UGUU UGUUGGC CGGUU GGGU GUCUUGU GCGU@LB@3'-UUU...GUUAA UG U G GUAG AUU UUC A AAGGC...UCA-5'@LB@ | |@LB@ 83 34@LB@@LB@@LB@Energy -18.83 kcal/mol@LB@Hybridization Energy -42.1612 kcal/mol@LB@Unfolding Energy - mRNA 9.04443 kcal/mol@LB@Unfolding Energy - sRNA 22.5095 kcal/mol@LB@@LB@Position - mRNA 210 -- 262@LB@Position - sRNA 35 -- 82@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 62 -- 68@LB@ |
146 |
0.007509 |
0.1831 |
stm1510 |
ydfH |
-14.80 |
0.126744 |
211 -- 261 |
32 -- 88 |
GntR family transcriptional regulator |
|
_____________210_____________________________________________________262\n_____________|_______________________________________________________|\n5'-UGA...AAAAA__AA____GAAU_____UCG___________UUAACCCU_______CUGU_____AGCAA...GCA-3'\n______________GU__GAAU____GACCG_____AAACGCAGC________ACACAGC____CAACC\n______________||__||||____||||:_____||||:||:|________|||||:|____|||||\n______________CA__CUUA____CUGGU_____UUUGUGUUG________UGUGUUG____GUUGG\n3'-UUU...GGCAC__GA____GCGU_____UAACG_________U______________UAGU_____CAUUC...UCA-5'\n_____________|_______________________________________________________|\n_____________89______________________________________________________31\n |
228 -- 234 |
72 -- 78 |
-34.0267 kcal/mol |
5.39256 kcal/mol |
17.9909 kcal/mol |
210 262@LB@ | |@LB@5'-UGA...AAAAA AA GAAU UCG UUAACCCU CUGU AGCAA...GCA-3'@LB@ GU GAAU GACCG AAACGCAGC ACACAGC CAACC@LB@ || |||| ||||: ||||:||:| |||||:| |||||@LB@ CA CUUA CUGGU UUUGUGUUG UGUGUUG GUUGG@LB@3'-UUU...GGCAC GA GCGU UAACG U UAGU CAUUC...UCA-5'@LB@ | |@LB@ 89 31@LB@@LB@@LB@Energy -14.80 kcal/mol@LB@Hybridization Energy -34.0267 kcal/mol@LB@Unfolding Energy - mRNA 5.39256 kcal/mol@LB@Unfolding Energy - sRNA 17.9909 kcal/mol@LB@@LB@Position - mRNA 211 -- 261@LB@Position - sRNA 32 -- 88@LB@Position Seed - mRNA 228 -- 234@LB@Position Seed - sRNA 72 -- 78@LB@ |
38 |
0.001379 |
0.1215 |
stm0150 |
aroP |
-12.21 |
0.313123 |
213 -- 232 |
63 -- 83 |
APC family aromatic amino acid transporter |
|
_____________212_________________________233\n_____________|___________________________|\n5'-CAU...UGAUG____GU_____________A_______CAAGC...UGU-3'\n______________GACA__CAGCAGCACGGCG__GCAGCU\n______________:|||__||:||:|||::|:__:||:|:\n______________UUGU__GUUGUUGUGUUGU__UGUUGG\n3'-UUU...AACGU___________________AG______CAUUC...UCA-5'\n_____________|___________________________|\n_____________84__________________________62\n |
219 -- 225 |
71 -- 77 |
-26.8853 kcal/mol |
7.73214 kcal/mol |
8.28637 kcal/mol |
212 233@LB@ | |@LB@5'-CAU...UGAUG GU A CAAGC...UGU-3'@LB@ GACA CAGCAGCACGGCG GCAGCU@LB@ :||| ||:||:|||::|: :||:|:@LB@ UUGU GUUGUUGUGUUGU UGUUGG@LB@3'-UUU...AACGU AG CAUUC...UCA-5'@LB@ | |@LB@ 84 62@LB@@LB@@LB@Energy -12.21 kcal/mol@LB@Hybridization Energy -26.8853 kcal/mol@LB@Unfolding Energy - mRNA 7.73214 kcal/mol@LB@Unfolding Energy - sRNA 8.28637 kcal/mol@LB@@LB@Position - mRNA 213 -- 232@LB@Position - sRNA 63 -- 83@LB@Position Seed - mRNA 219 -- 225@LB@Position Seed - sRNA 71 -- 77@LB@ |