44 |
0.001631 |
0.1267 |
stm1318 |
katE |
-13.62 |
0.194137 |
191 -- 230 |
43 -- 82 |
catalase HPII |
|
_____________190_________231\n_____________|___________|\n5'-GGC...UCUGC___________UCCCC...AUC-3'\n______________CGUUCCG_CUC\n______________|||||||_|||\n______________GCAAGGC_GAG\n3'-UUU...GAAAA_______C___UCCUUCA-5'\n_____________|___________|\n_____________83__________42\n |
99 -- 105 |
12 -- 18 |
-14.968 kcal/mol |
1.4568 kcal/mol |
6.53351 kcal/mol |
190 231@LB@ | |@LB@5'-GGC...UCUGC UCCCC...AUC-3'@LB@ CGUUCCG CUC@LB@ ||||||| |||@LB@ GCAAGGC GAG@LB@3'-UUU...GAAAA C UCCUUCA-5'@LB@ | |@LB@ 83 42@LB@@LB@@LB@Energy -13.62 kcal/mol@LB@Hybridization Energy -14.968 kcal/mol@LB@Unfolding Energy - mRNA 1.4568 kcal/mol@LB@Unfolding Energy - sRNA 6.53351 kcal/mol@LB@@LB@Position - mRNA 191 -- 230@LB@Position - sRNA 43 -- 82@LB@Position Seed - mRNA 99 -- 105@LB@Position Seed - sRNA 12 -- 18@LB@ |
113 |
0.005549 |
0.1728 |
stm2948 |
cysJ |
-13.61 |
0.194760 |
269 -- 298 |
56 -- 85 |
sulfite reductase [NADPH] flavoprotein subunit alpha |
|
_____________268_______________________299\n_____________|_________________________|\n5'-GUU...CCGCU____UUACUG_______________UGACG...UUG-3'\n______________UUGC______GAACAUAACGACGCA\n______________||||______:||||:|||:||:||\n______________AACG______UUUGUGUUGUUGUGU\n3'-UUU...UGGUU_________________________UGUAG...UCA-5'\n_____________|_________________________|\n_____________86________________________55\n |
195 -- 201 |
74 -- 80 |
-20.7575 kcal/mol |
3.67756 kcal/mol |
3.73922 kcal/mol |
268 299@LB@ | |@LB@5'-GUU...CCGCU UUACUG UGACG...UUG-3'@LB@ UUGC GAACAUAACGACGCA@LB@ |||| :||||:|||:||:||@LB@ AACG UUUGUGUUGUUGUGU@LB@3'-UUU...UGGUU UGUAG...UCA-5'@LB@ | |@LB@ 86 55@LB@@LB@@LB@Energy -13.61 kcal/mol@LB@Hybridization Energy -20.7575 kcal/mol@LB@Unfolding Energy - mRNA 3.67756 kcal/mol@LB@Unfolding Energy - sRNA 3.73922 kcal/mol@LB@@LB@Position - mRNA 269 -- 298@LB@Position - sRNA 56 -- 85@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 74 -- 80@LB@ |
27 |
0.0006872 |
0.08814 |
stm1806 |
nhaB |
-13.59 |
0.196266 |
64 -- 136 |
66 -- 135 |
Na+/H+ antiporter NhaB |
|
_____________63___________________________________________________________________________137\n_____________|____________________________________________________________________________|\n5'-AGC...AUGAA_________GAUCAAG______AUU______U_____CU______AUC_U____G__UU__UU____U________CUCGC...CAU-3'\n______________GAAAAAGGG_______GC_ACC____UCUGA_AUCGC__GCCAAU___G_UAAG_AC__GC__GCAU__CGUCGCG\n______________|||||||||_______||_|||____|||||_|||||__:|||||___|_:||:_||__:|__:||:__|:||:|:\n______________CUUUUUCCC_______CG_UGG____AGACU_UAGCG__UGGUUA___C_GUUU_UG__UG__UGUG__GUAGUGU\n3'-UUU...CUUCA_________AUCAGAG__A___CACC___________UC______A________G__U___U_____UU_______UGGCA...UCA-5'\n_____________|____________________________________________________________________________|\n_____________136__________________________________________________________________________65\n |
130 -- 136 |
66 -- 72 |
-51.3167 kcal/mol |
14.8404 kcal/mol |
22.5826 kcal/mol |
63 137@LB@ | |@LB@5'-AGC...AUGAA GAUCAAG AUU U CU AUC U G UU UU U CUCGC...CAU-3'@LB@ GAAAAAGGG GC ACC UCUGA AUCGC GCCAAU G UAAG AC GC GCAU CGUCGCG@LB@ ||||||||| || ||| ||||| ||||| :||||| | :||: || :| :||: |:||:|:@LB@ CUUUUUCCC CG UGG AGACU UAGCG UGGUUA C GUUU UG UG UGUG GUAGUGU@LB@3'-UUU...CUUCA AUCAGAG A CACC UC A G U U UU UGGCA...UCA-5'@LB@ | |@LB@ 136 65@LB@@LB@@LB@Energy -13.59 kcal/mol@LB@Hybridization Energy -51.3167 kcal/mol@LB@Unfolding Energy - mRNA 14.8404 kcal/mol@LB@Unfolding Energy - sRNA 22.5826 kcal/mol@LB@@LB@Position - mRNA 64 -- 136@LB@Position - sRNA 66 -- 135@LB@Position Seed - mRNA 130 -- 136@LB@Position Seed - sRNA 66 -- 72@LB@ |
189 |
0.01049 |
0.1967 |
stm0871 |
ybjM |
-13.57 |
0.197684 |
34 -- 53 |
71 -- 89 |
similar to E. coli orf hypothetical protein (AAC73935.1); Blastp hit to AAC73935.1 (125 aa) 72% identity in aa 1 - 125 |
|
_____________33___________________54\n_____________|____________________|\n5'-AAU...GCAUC______AA____________AUAUA...GCG-3'\n______________CAAAUA__AACAACACAACA\n______________||||:|__||||||||||||\n______________GUUUGU__UUGUUGUGUUGU\n3'-UUU...UUAAC______G_____________AGUGU...UCA-5'\n_____________|____________________|\n_____________90___________________70\n |
47 -- 53 |
71 -- 77 |
-19.7565 kcal/mol |
2.01075 kcal/mol |
3.79866 kcal/mol |
33 54@LB@ | |@LB@5'-AAU...GCAUC AA AUAUA...GCG-3'@LB@ CAAAUA AACAACACAACA@LB@ ||||:| ||||||||||||@LB@ GUUUGU UUGUUGUGUUGU@LB@3'-UUU...UUAAC G AGUGU...UCA-5'@LB@ | |@LB@ 90 70@LB@@LB@@LB@Energy -13.57 kcal/mol@LB@Hybridization Energy -19.7565 kcal/mol@LB@Unfolding Energy - mRNA 2.01075 kcal/mol@LB@Unfolding Energy - sRNA 3.79866 kcal/mol@LB@@LB@Position - mRNA 34 -- 53@LB@Position - sRNA 71 -- 89@LB@Position Seed - mRNA 47 -- 53@LB@Position Seed - sRNA 71 -- 77@LB@ |
164 |
0.008796 |
0.191 |
stm2932 |
ygbE |
-13.54 |
0.199482 |
240 -- 279 |
44 -- 82 |
putative inner membrane protein |
|
_____________239________________280\n_____________|__________________|\n5'-CGC...GCGUA__________________UUUCA...CCA-3'\n______________AUAGC__CAUAACAUUAC\n______________|:|:|__||:|||||:||\n______________UGUUG__GUGUUGUAGUG\n3'-UUU...GUUUG_____UU___________UUGGC...UCA-5'\n_____________|__________________|\n_____________83_________________43\n |
250 -- 256 |
67 -- 73 |
-14.8194 kcal/mol |
1.59581 kcal/mol |
5.25507 kcal/mol |
239 280@LB@ | |@LB@5'-CGC...GCGUA UUUCA...CCA-3'@LB@ AUAGC CAUAACAUUAC@LB@ |:|:| ||:|||||:||@LB@ UGUUG GUGUUGUAGUG@LB@3'-UUU...GUUUG UU UUGGC...UCA-5'@LB@ | |@LB@ 83 43@LB@@LB@@LB@Energy -13.54 kcal/mol@LB@Hybridization Energy -14.8194 kcal/mol@LB@Unfolding Energy - mRNA 1.59581 kcal/mol@LB@Unfolding Energy - sRNA 5.25507 kcal/mol@LB@@LB@Position - mRNA 240 -- 279@LB@Position - sRNA 44 -- 82@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 67 -- 73@LB@ |
64 |
0.003108 |
0.1596 |
stm4162 |
thiF |
-13.53 |
0.200092 |
247 -- 294 |
34 -- 76 |
molybdopterin/thiamine biosynthesis adenylyltransferase |
|
_____________246___________________295\n_____________|_____________________|\n5'-GCA...GCUCG_______________A_____AGCAA...UUG-3'\n______________GCGAUAUCGCGAUUG_AGGCC\n______________:|:|:|||:|:|::|_|:|||\n______________UGUUGUAGUGUUGGC_UUCGG\n3'-UUU...UGUUG_______________A_____UUUUC...UCA-5'\n_____________|_____________________|\n_____________77____________________33\n |
248 -- 254 |
69 -- 75 |
-25.2172 kcal/mol |
7.66984 kcal/mol |
8.92374 kcal/mol |
246 295@LB@ | |@LB@5'-GCA...GCUCG A AGCAA...UUG-3'@LB@ GCGAUAUCGCGAUUG AGGCC@LB@ :|:|:|||:|:|::| |:|||@LB@ UGUUGUAGUGUUGGC UUCGG@LB@3'-UUU...UGUUG A UUUUC...UCA-5'@LB@ | |@LB@ 77 33@LB@@LB@@LB@Energy -13.53 kcal/mol@LB@Hybridization Energy -25.2172 kcal/mol@LB@Unfolding Energy - mRNA 7.66984 kcal/mol@LB@Unfolding Energy - sRNA 8.92374 kcal/mol@LB@@LB@Position - mRNA 247 -- 294@LB@Position - sRNA 34 -- 76@LB@Position Seed - mRNA 248 -- 254@LB@Position Seed - sRNA 69 -- 75@LB@ |
188 |
0.01049 |
0.1967 |
stm0290 |
N/A |
-13.50 |
0.202376 |
129 -- 157 |
48 -- 69 |
|
|
_____________128____________________________________________________158\n_____________|______________________________________________________|\n5'-UGC...UUCUC______C___CAUACCGCA____________________________UC_____UGAAA...GAA-3'\n______________AUGGAU_GAC__________UACAGGA________AGGGU_GUUUUG__CUGCC\n______________|||||:_|||__________|||||||________|||||_||:|:|__||:||\n______________UACCUG_CUG__________AUGUCCU________UCCCA_CAGAGC__GAUGG\n3'-UUU...AGUGA______U___UCCCAUUUAC_______UCACUUUU_____U_____________CACCA...UCA-5'\n_____________|______________________________________________________|\n_____________70_____________________________________________________47\n |
220 -- 226 |
139 -- 145 |
-35.7606 kcal/mol |
12.8035 kcal/mol |
12.8046 kcal/mol |
128 158@LB@ | |@LB@5'-UGC...UUCUC C CAUACCGCA UC UGAAA...GAA-3'@LB@ AUGGAU GAC UACAGGA AGGGU GUUUUG CUGCC@LB@ |||||: ||| ||||||| ||||| ||:|:| ||:||@LB@ UACCUG CUG AUGUCCU UCCCA CAGAGC GAUGG@LB@3'-UUU...AGUGA U UCCCAUUUAC UCACUUUU U CACCA...UCA-5'@LB@ | |@LB@ 70 47@LB@@LB@@LB@Energy -13.50 kcal/mol@LB@Hybridization Energy -35.7606 kcal/mol@LB@Unfolding Energy - mRNA 12.8035 kcal/mol@LB@Unfolding Energy - sRNA 12.8046 kcal/mol@LB@@LB@Position - mRNA 129 -- 157@LB@Position - sRNA 48 -- 69@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 139 -- 145@LB@ |
165 |
0.008886 |
0.1918 |
stm0281 |
N/A |
-13.47 |
0.204933 |
267 -- 289 |
36 -- 56 |
type VI secretion system-associated protein |
|
_____________266______________________________________________290\n_____________|________________________________________________|\n5'-UGA...UAAUU____A_____A______A__UAU___C_____UGACC_C_______G_AGUGA...ACC-3'\n______________ACGG_ACGGG_UAAAUG_AU___GAG_UGGAA_____G_GUAGUCU_G\n______________||:|_||:||_||||||_|:___:||_||:||_____|_|||||||_|\n______________UGUC_UGUCC_AUUUAC_UG___UUC_ACUUU_____C_CAUCAGA_C\n3'-UUU...AUACC__________C______A__UCC_________UUC___________G_GAUGG...UCA-5'\n_____________|________________________________________________|\n_____________57_______________________________________________35\n |
219 -- 225 |
121 -- 127 |
-29.4304 kcal/mol |
8.43831 kcal/mol |
11.9516 kcal/mol |
266 290@LB@ | |@LB@5'-UGA...UAAUU A A A UAU C UGACC C G AGUGA...ACC-3'@LB@ ACGG ACGGG UAAAUG AU GAG UGGAA G GUAGUCU G@LB@ ||:| ||:|| |||||| |: :|| ||:|| | ||||||| |@LB@ UGUC UGUCC AUUUAC UG UUC ACUUU C CAUCAGA C@LB@3'-UUU...AUACC C A UCC UUC G GAUGG...UCA-5'@LB@ | |@LB@ 57 35@LB@@LB@@LB@Energy -13.47 kcal/mol@LB@Hybridization Energy -29.4304 kcal/mol@LB@Unfolding Energy - mRNA 8.43831 kcal/mol@LB@Unfolding Energy - sRNA 11.9516 kcal/mol@LB@@LB@Position - mRNA 267 -- 289@LB@Position - sRNA 36 -- 56@LB@Position Seed - mRNA 219 -- 225@LB@Position Seed - sRNA 121 -- 127@LB@ |
121 |
0.006021 |
0.1758 |
stm3903 |
ilvE |
-13.34 |
0.214101 |
130 -- 170 |
39 -- 78 |
branched chain amino acid aminotransferase |
|
_____________129__________________171\n_____________|____________________|\n5'-GGU...CCAGA___CU___C___U_______AAUCC...GUA-3'\n______________GCG___GC_ACA_CACAACA\n______________||:___:|_|||_|||||||\n______________CGU___UG_UGU_GUGUUGU\n3'-UUU...GUUAA___UUG__U___U_______AGUGU...UCA-5'\n_____________|____________________|\n_____________79___________________38\n |
164 -- 170 |
71 -- 77 |
-14.4922 kcal/mol |
2.12049 kcal/mol |
3.80671 kcal/mol |
129 171@LB@ | |@LB@5'-GGU...CCAGA CU C U AAUCC...GUA-3'@LB@ GCG GC ACA CACAACA@LB@ ||: :| ||| |||||||@LB@ CGU UG UGU GUGUUGU@LB@3'-UUU...GUUAA UUG U U AGUGU...UCA-5'@LB@ | |@LB@ 79 38@LB@@LB@@LB@Energy -13.34 kcal/mol@LB@Hybridization Energy -14.4922 kcal/mol@LB@Unfolding Energy - mRNA 2.12049 kcal/mol@LB@Unfolding Energy - sRNA 3.80671 kcal/mol@LB@@LB@Position - mRNA 130 -- 170@LB@Position - sRNA 39 -- 78@LB@Position Seed - mRNA 164 -- 170@LB@Position Seed - sRNA 71 -- 77@LB@ |
192 |
0.01067 |
0.197 |
stm2650 |
yfiP |
-13.22 |
0.223534 |
188 -- 232 |
36 -- 90 |
DTW domain-containing protein |
|
_____________187_________________________233\n_____________|___________________________|\n5'-UCA...UCUCC________UUUCUAUGACC________UGUCC...GCU-3'\n______________GCAAACGC___________AAUAACGC\n______________||||||:|___________||:|||:|\n______________CGUUUGUG___________UUGUUGUG\n3'-UUU...GUUAA___________________________UUGUA...UCA-5'\n_____________|___________________________|\n_____________91__________________________35\n |
208 -- 214 |
75 -- 81 |
-16.7007 kcal/mol |
3.95203 kcal/mol |
3.72363 kcal/mol |
187 233@LB@ | |@LB@5'-UCA...UCUCC UUUCUAUGACC UGUCC...GCU-3'@LB@ GCAAACGC AAUAACGC@LB@ ||||||:| ||:|||:|@LB@ CGUUUGUG UUGUUGUG@LB@3'-UUU...GUUAA UUGUA...UCA-5'@LB@ | |@LB@ 91 35@LB@@LB@@LB@Energy -13.22 kcal/mol@LB@Hybridization Energy -16.7007 kcal/mol@LB@Unfolding Energy - mRNA 3.95203 kcal/mol@LB@Unfolding Energy - sRNA 3.72363 kcal/mol@LB@@LB@Position - mRNA 188 -- 232@LB@Position - sRNA 36 -- 90@LB@Position Seed - mRNA 208 -- 214@LB@Position Seed - sRNA 75 -- 81@LB@ |