51 |
0.002608 |
0.1727 |
b2299 |
yfcD |
-9.22 |
0.194301 |
162 -- 171 |
49 -- 58 |
putative NUDIX hydrolase |
|
_____________161________172\n_____________|__________|\n5'-AGA...CAAAA__________GAGCG...AGU-3'\n______________UGCGCCGUAA\n______________||||||||||\n______________ACGCGGCAUU\n3'-UUU...AACCG__________UAAUA...GUG-5'\n_____________|__________|\n_____________59_________48\n |
165 -- 171 |
49 -- 55 |
-16.7903 kcal/mol |
2.6527 kcal/mol |
4.92198 kcal/mol |
161 172@LB@ | |@LB@5'-AGA...CAAAA GAGCG...AGU-3'@LB@ UGCGCCGUAA@LB@ ||||||||||@LB@ ACGCGGCAUU@LB@3'-UUU...AACCG UAAUA...GUG-5'@LB@ | |@LB@ 59 48@LB@@LB@@LB@Energy -9.22 kcal/mol@LB@Hybridization Energy -16.7903 kcal/mol@LB@Unfolding Energy - mRNA 2.6527 kcal/mol@LB@Unfolding Energy - sRNA 4.92198 kcal/mol@LB@@LB@Position - mRNA 162 -- 171@LB@Position - sRNA 49 -- 58@LB@Position Seed - mRNA 165 -- 171@LB@Position Seed - sRNA 49 -- 55@LB@ |
188 |
0.01115 |
0.2089 |
b4377 |
yjjU |
-9.16 |
0.198952 |
213 -- 243 |
51 -- 77 |
putative patatin-like family phospholipase |
|
_____________212______________________________244\n_____________|________________________________|\n5'-AGG...AGCGA_____UGUAACG_______AAUAU________UGUCG...GAC-3'\n______________AUACC________CUUGGU_____UGCGCCGU\n______________|:|||________|||||:_____||||||||\n______________UGUGG________GAACCG_____ACGCGGCA\n3'-UUU...GCGGU_____UCCCUUUA___________________UUUAA...GUG-5'\n_____________|________________________________|\n_____________78_______________________________50\n |
237 -- 243 |
51 -- 57 |
-26.4777 kcal/mol |
7.99131 kcal/mol |
9.32737 kcal/mol |
212 244@LB@ | |@LB@5'-AGG...AGCGA UGUAACG AAUAU UGUCG...GAC-3'@LB@ AUACC CUUGGU UGCGCCGU@LB@ |:||| |||||: ||||||||@LB@ UGUGG GAACCG ACGCGGCA@LB@3'-UUU...GCGGU UCCCUUUA UUUAA...GUG-5'@LB@ | |@LB@ 78 50@LB@@LB@@LB@Energy -9.16 kcal/mol@LB@Hybridization Energy -26.4777 kcal/mol@LB@Unfolding Energy - mRNA 7.99131 kcal/mol@LB@Unfolding Energy - sRNA 9.32737 kcal/mol@LB@@LB@Position - mRNA 213 -- 243@LB@Position - sRNA 51 -- 77@LB@Position Seed - mRNA 237 -- 243@LB@Position Seed - sRNA 51 -- 57@LB@ |
91 |
0.004841 |
0.1855 |
b3194 |
mlaE |
-9.16 |
0.198986 |
180 -- 189 |
67 -- 76 |
ABC transporter maintaining OM lipid asymmetry inner membrane permease protein |
|
_____________179________190\n_____________|__________|\n5'-GGA...UCUUU__________UUAAG...GCA-3'\n______________UACCAGGGAG\n______________:||||||||:\n______________GUGGUCCCUU\n3'-UUU...CGGUU__________UAGAA...GUG-5'\n_____________|__________|\n_____________77_________66\n |
183 -- 189 |
67 -- 73 |
-15.9485 kcal/mol |
2.86999 kcal/mol |
3.9178 kcal/mol |
179 190@LB@ | |@LB@5'-GGA...UCUUU UUAAG...GCA-3'@LB@ UACCAGGGAG@LB@ :||||||||:@LB@ GUGGUCCCUU@LB@3'-UUU...CGGUU UAGAA...GUG-5'@LB@ | |@LB@ 77 66@LB@@LB@@LB@Energy -9.16 kcal/mol@LB@Hybridization Energy -15.9485 kcal/mol@LB@Unfolding Energy - mRNA 2.86999 kcal/mol@LB@Unfolding Energy - sRNA 3.9178 kcal/mol@LB@@LB@Position - mRNA 180 -- 189@LB@Position - sRNA 67 -- 76@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 67 -- 73@LB@ |
191 |
0.01171 |
0.2159 |
b4221 |
tamB |
-9.06 |
0.207346 |
81 -- 101 |
52 -- 76 |
translocation and assembly module for autotransporter export inner membrane subunit |
|
_____________80_________________________102\n_____________|__________________________|\n5'-ACC...ACCGG__________________G_______GGAAU...AUC-3'\n______________UACCGGGG___UC__GGC_UGCGCUG\n______________:|||:|||___||__|||_|||||:|\n______________GUGGUCCC___AG__CCG_ACGCGGC\n3'-UUU...CGGUU________UUU__AA___________AUUUA...GUG-5'\n_____________|__________________________|\n_____________77_________________________51\n |
95 -- 101 |
52 -- 58 |
-29.4253 kcal/mol |
11.0996 kcal/mol |
9.26585 kcal/mol |
80 102@LB@ | |@LB@5'-ACC...ACCGG G GGAAU...AUC-3'@LB@ UACCGGGG UC GGC UGCGCUG@LB@ :|||:||| || ||| |||||:|@LB@ GUGGUCCC AG CCG ACGCGGC@LB@3'-UUU...CGGUU UUU AA AUUUA...GUG-5'@LB@ | |@LB@ 77 51@LB@@LB@@LB@Energy -9.06 kcal/mol@LB@Hybridization Energy -29.4253 kcal/mol@LB@Unfolding Energy - mRNA 11.0996 kcal/mol@LB@Unfolding Energy - sRNA 9.26585 kcal/mol@LB@@LB@Position - mRNA 81 -- 101@LB@Position - sRNA 52 -- 76@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 52 -- 58@LB@ |
92 |
0.004911 |
0.1855 |
b3732 |
atpD |
-9.01 |
0.211333 |
117 -- 128 |
1 -- 11 |
F1 sector of membrane-bound ATP synthase beta subunit |
|
_____________116__________129\n_____________|____________|\n5'-GGC...GCUCG_______A____UACUC...AAA-3'\n______________UCAGGCC_GCAU\n______________|||||||_|||:\n______________AGUCCGG_CGUG\n3'-UUU...CAAAA____________-5'\n_____________|___________|\n_____________12__________1\n |
117 -- 123 |
5 -- 11 |
-17.8068 kcal/mol |
3.15312 kcal/mol |
5.60325 kcal/mol |
116 129@LB@ | |@LB@5'-GGC...GCUCG A UACUC...AAA-3'@LB@ UCAGGCC GCAU@LB@ ||||||| |||:@LB@ AGUCCGG CGUG@LB@3'-UUU...CAAAA -5'@LB@ | |@LB@ 12 1@LB@@LB@@LB@Energy -9.01 kcal/mol@LB@Hybridization Energy -17.8068 kcal/mol@LB@Unfolding Energy - mRNA 3.15312 kcal/mol@LB@Unfolding Energy - sRNA 5.60325 kcal/mol@LB@@LB@Position - mRNA 117 -- 128@LB@Position - sRNA 1 -- 11@LB@Position Seed - mRNA 117 -- 123@LB@Position Seed - sRNA 5 -- 11@LB@ |
71 |
0.003482 |
0.1727 |
b4046 |
zur |
-8.96 |
0.216158 |
254 -- 300 |
53 -- 94 |
transcriptional repressor Zn(II)-binding |
|
_____________253__________________________________________________300\n_____________|____________________________________________________|\n5'-UAA...UGCGC__A___U___________UGACCCCAC______U___________________-3'\n______________GC_GCG_AAUG_UGCGCC_________AGCGCC__GGAAGU____GUUGCGCC\n______________||_|||_|||:_||||||_________|:|:||__||||:|____|:||||||\n______________CG_CGC_UUAU_ACGCGG_________UUGUGG__CCUUUA____CGACGCGG\n3'-UUU...CCCCA___________G_____________________UC______GAAC________CAUUU...GUG-5'\n_____________|_____________________________________________________|\n_____________95____________________________________________________52\n |
294 -- 300 |
53 -- 59 |
-43.5981 kcal/mol |
17.5702 kcal/mol |
17.0684 kcal/mol |
253 300@LB@ | |@LB@5'-UAA...UGCGC A U UGACCCCAC U -3'@LB@ GC GCG AAUG UGCGCC AGCGCC GGAAGU GUUGCGCC@LB@ || ||| |||: |||||| |:|:|| ||||:| |:||||||@LB@ CG CGC UUAU ACGCGG UUGUGG CCUUUA CGACGCGG@LB@3'-UUU...CCCCA G UC GAAC CAUUU...GUG-5'@LB@ | |@LB@ 95 52@LB@@LB@@LB@Energy -8.96 kcal/mol@LB@Hybridization Energy -43.5981 kcal/mol@LB@Unfolding Energy - mRNA 17.5702 kcal/mol@LB@Unfolding Energy - sRNA 17.0684 kcal/mol@LB@@LB@Position - mRNA 254 -- 300@LB@Position - sRNA 53 -- 94@LB@Position Seed - mRNA 294 -- 300@LB@Position Seed - sRNA 53 -- 59@LB@ |
26 |
0.001553 |
0.1727 |
b0853 |
ybjN |
-8.94 |
0.217650 |
161 -- 169 |
52 -- 60 |
negative regulator of motility; multicopy suppressor of coaA(Ts) |
|
_____________160_______170\n_____________|_________|\n5'-CGC...CGUAA_________GUCUU...AUC-3'\n______________GCUGUGCCG\n______________||||:||||\n______________CGACGCGGC\n3'-UUU...AGAAC_________AUUUA...GUG-5'\n_____________|_________|\n_____________61________51\n |
163 -- 169 |
52 -- 58 |
-18.9448 kcal/mol |
5.13325 kcal/mol |
4.86882 kcal/mol |
160 170@LB@ | |@LB@5'-CGC...CGUAA GUCUU...AUC-3'@LB@ GCUGUGCCG@LB@ ||||:||||@LB@ CGACGCGGC@LB@3'-UUU...AGAAC AUUUA...GUG-5'@LB@ | |@LB@ 61 51@LB@@LB@@LB@Energy -8.94 kcal/mol@LB@Hybridization Energy -18.9448 kcal/mol@LB@Unfolding Energy - mRNA 5.13325 kcal/mol@LB@Unfolding Energy - sRNA 4.86882 kcal/mol@LB@@LB@Position - mRNA 161 -- 169@LB@Position - sRNA 52 -- 60@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 52 -- 58@LB@ |
55 |
0.002731 |
0.1727 |
b2480 |
bcp |
-8.89 |
0.222722 |
156 -- 187 |
28 -- 56 |
peroxiredoxin; thiol peroxidase thioredoxin-dependent |
|
_____________155_________________________________188\n_____________|___________________________________|\n5'-GAG...AUUAA______C_______CCCAAC_______________AUGGA...UUC-3'\n______________CGUCGU_AAUUAUU______AUGAUGA___ACAGG\n______________||:|||_|||||||______|||||||___|||:|\n______________GCGGCA_UUAAUAA______UACUACU___UGUUC\n3'-UUU...CCGAC______U____________________CAA_____CCGUG...GUG-5'\n_____________|___________________________________|\n_____________57__________________________________27\n |
176 -- 182 |
36 -- 42 |
-21.7802 kcal/mol |
6.3273 kcal/mol |
6.56571 kcal/mol |
155 188@LB@ | |@LB@5'-GAG...AUUAA C CCCAAC AUGGA...UUC-3'@LB@ CGUCGU AAUUAUU AUGAUGA ACAGG@LB@ ||:||| ||||||| ||||||| |||:|@LB@ GCGGCA UUAAUAA UACUACU UGUUC@LB@3'-UUU...CCGAC U CAA CCGUG...GUG-5'@LB@ | |@LB@ 57 27@LB@@LB@@LB@Energy -8.89 kcal/mol@LB@Hybridization Energy -21.7802 kcal/mol@LB@Unfolding Energy - mRNA 6.3273 kcal/mol@LB@Unfolding Energy - sRNA 6.56571 kcal/mol@LB@@LB@Position - mRNA 156 -- 187@LB@Position - sRNA 28 -- 56@LB@Position Seed - mRNA 176 -- 182@LB@Position Seed - sRNA 36 -- 42@LB@ |
146 |
0.008611 |
0.2059 |
b3750 |
rbsC |
-8.88 |
0.223197 |
137 -- 159 |
56 -- 77 |
D-ribose ABC transporter permease |
|
_____________136_______________________160\n_____________|_________________________|\n5'-GAU...AGGCC_____________G_UAA_______CGCUG...UCU-3'\n______________AC_CCA_GGAAGU_U___UGGCUGC\n______________||_|||_||||:|_|___|||||||\n______________UG_GGU_CCUUUA_A___ACCGACG\n3'-UUU...GCGGU__U___C______G___________CGGCA...GUG-5'\n_____________|_________________________|\n_____________78________________________55\n |
153 -- 159 |
56 -- 62 |
-22.4095 kcal/mol |
5.11916 kcal/mol |
8.4081 kcal/mol |
136 160@LB@ | |@LB@5'-GAU...AGGCC G UAA CGCUG...UCU-3'@LB@ AC CCA GGAAGU U UGGCUGC@LB@ || ||| ||||:| | |||||||@LB@ UG GGU CCUUUA A ACCGACG@LB@3'-UUU...GCGGU U C G CGGCA...GUG-5'@LB@ | |@LB@ 78 55@LB@@LB@@LB@Energy -8.88 kcal/mol@LB@Hybridization Energy -22.4095 kcal/mol@LB@Unfolding Energy - mRNA 5.11916 kcal/mol@LB@Unfolding Energy - sRNA 8.4081 kcal/mol@LB@@LB@Position - mRNA 137 -- 159@LB@Position - sRNA 56 -- 77@LB@Position Seed - mRNA 153 -- 159@LB@Position Seed - sRNA 56 -- 62@LB@ |
163 |
0.009572 |
0.2068 |
b4126 |
yjdI |
-8.84 |
0.226749 |
182 -- 194 |
26 -- 41 |
putative 4Fe-4S mono-cluster protein |
|
_____________181______________195\n_____________|________________|\n5'-UAG...CAUAC_______A________AAGGU...GCG-3'\n______________UGAUGAG____GAGGG\n______________|||||||____:||||\n______________ACUACUC____UUCCC\n3'-UUU...AUAAU_______AAUG_____GUGUC...GUG-5'\n_____________|________________|\n_____________42_______________25\n |
182 -- 188 |
35 -- 41 |
-13.4129 kcal/mol |
1.87738 kcal/mol |
2.69216 kcal/mol |
181 195@LB@ | |@LB@5'-UAG...CAUAC A AAGGU...GCG-3'@LB@ UGAUGAG GAGGG@LB@ ||||||| :||||@LB@ ACUACUC UUCCC@LB@3'-UUU...AUAAU AAUG GUGUC...GUG-5'@LB@ | |@LB@ 42 25@LB@@LB@@LB@Energy -8.84 kcal/mol@LB@Hybridization Energy -13.4129 kcal/mol@LB@Unfolding Energy - mRNA 1.87738 kcal/mol@LB@Unfolding Energy - sRNA 2.69216 kcal/mol@LB@@LB@Position - mRNA 182 -- 194@LB@Position - sRNA 26 -- 41@LB@Position Seed - mRNA 182 -- 188@LB@Position Seed - sRNA 35 -- 41@LB@ |