147 |
0.01411 |
0.3104 |
b0441 |
ppiD |
-10.51 |
0.099467 |
81 -- 98 |
3 -- 21 |
periplasmic folding chaperone has an inactive PPIase domain |
|
_____________80__________________99\n_____________|___________________|\n5'-GUA...UAUUC______UUUC_________GUGGG...ACC-3'\n______________GGUGAC_____UGCGUCUU\n______________|:|:||_____:|||||||\n______________CUAUUG_____GCGCAGAA\n3'-UUU...UACUA______UUUAC________AG-5'\n_____________|___________________|\n_____________22__________________2\n |
92 -- 98 |
3 -- 9 |
-17.0331 kcal/mol |
5.27038 kcal/mol |
1.257 kcal/mol |
80 99@LB@ | |@LB@5'-GUA...UAUUC UUUC GUGGG...ACC-3'@LB@ GGUGAC UGCGUCUU@LB@ |:|:|| :|||||||@LB@ CUAUUG GCGCAGAA@LB@3'-UUU...UACUA UUUAC AG-5'@LB@ | |@LB@ 22 2@LB@@LB@@LB@Energy -10.51 kcal/mol@LB@Hybridization Energy -17.0331 kcal/mol@LB@Unfolding Energy - mRNA 5.27038 kcal/mol@LB@Unfolding Energy - sRNA 1.257 kcal/mol@LB@@LB@Position - mRNA 81 -- 98@LB@Position - sRNA 3 -- 21@LB@Position Seed - mRNA 92 -- 98@LB@Position Seed - sRNA 3 -- 9@LB@ |
148 |
0.01421 |
0.3104 |
b2379 |
alaC |
-8.54 |
0.209762 |
290 -- 297 |
5 -- 12 |
glutamate-pyruvate aminotransferase; glutamic-pyruvic transaminase (GPT); alanine transaminase |
|
_____________289______298\n_____________|________|\n5'-UGU...AUGGC________GGC-3'\n______________UGCGCGUC\n______________||||||||\n______________ACGCGCAG\n3'-UUU...UGUUU________AAAG-5'\n_____________|________|\n_____________13_______4\n |
291 -- 297 |
5 -- 11 |
-14.909 kcal/mol |
5.25295 kcal/mol |
1.11508 kcal/mol |
289 298@LB@ | |@LB@5'-UGU...AUGGC GGC-3'@LB@ UGCGCGUC@LB@ ||||||||@LB@ ACGCGCAG@LB@3'-UUU...UGUUU AAAG-5'@LB@ | |@LB@ 13 4@LB@@LB@@LB@Energy -8.54 kcal/mol@LB@Hybridization Energy -14.909 kcal/mol@LB@Unfolding Energy - mRNA 5.25295 kcal/mol@LB@Unfolding Energy - sRNA 1.11508 kcal/mol@LB@@LB@Position - mRNA 290 -- 297@LB@Position - sRNA 5 -- 12@LB@Position Seed - mRNA 291 -- 297@LB@Position Seed - sRNA 5 -- 11@LB@ |
149 |
0.01422 |
0.3104 |
b0415 |
ribE |
-7.20 |
0.333957 |
258 -- 265 |
4 -- 11 |
riboflavin synthase beta chain |
|
_____________257______266\n_____________|________|\n5'-CGG...CCAUC________CAACA...GUG-3'\n______________GCGCGUUU\n______________||||||:|\n______________CGCGCAGA\n3'-UUU...GUUUA________AAG-5'\n_____________|________|\n_____________12_______3\n |
259 -- 265 |
4 -- 10 |
-13.1965 kcal/mol |
4.83677 kcal/mol |
1.15639 kcal/mol |
257 266@LB@ | |@LB@5'-CGG...CCAUC CAACA...GUG-3'@LB@ GCGCGUUU@LB@ ||||||:|@LB@ CGCGCAGA@LB@3'-UUU...GUUUA AAG-5'@LB@ | |@LB@ 12 3@LB@@LB@@LB@Energy -7.20 kcal/mol@LB@Hybridization Energy -13.1965 kcal/mol@LB@Unfolding Energy - mRNA 4.83677 kcal/mol@LB@Unfolding Energy - sRNA 1.15639 kcal/mol@LB@@LB@Position - mRNA 258 -- 265@LB@Position - sRNA 4 -- 11@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 4 -- 10@LB@ |
151 |
0.01442 |
0.3104 |
b1395 |
paaH |
-15.43 |
0.013105 |
189 -- 216 |
8 -- 31 |
3-hydroxyadipyl-CoA dehydrogenase NAD+-dependent |
|
_____________188__________________________217\n_____________|____________________________|\n5'-GGC...GUUCA______AAUA_C________________AAACU...UGU-3'\n______________CGGGGA____G_AUGAUGAUAAAUGUGC\n______________|:||||____|_|||||:|:|||||:||\n______________GUCCCU____C_UACUAUUGUUUACGCG\n3'-UUU...CUUAA______A_____________________CAGAAAG-5'\n_____________|____________________________|\n_____________32___________________________7\n |
210 -- 216 |
8 -- 14 |
-28.6523 kcal/mol |
5.47369 kcal/mol |
7.74551 kcal/mol |
188 217@LB@ | |@LB@5'-GGC...GUUCA AAUA C AAACU...UGU-3'@LB@ CGGGGA G AUGAUGAUAAAUGUGC@LB@ |:|||| | |||||:|:|||||:||@LB@ GUCCCU C UACUAUUGUUUACGCG@LB@3'-UUU...CUUAA A CAGAAAG-5'@LB@ | |@LB@ 32 7@LB@@LB@@LB@Energy -15.43 kcal/mol@LB@Hybridization Energy -28.6523 kcal/mol@LB@Unfolding Energy - mRNA 5.47369 kcal/mol@LB@Unfolding Energy - sRNA 7.74551 kcal/mol@LB@@LB@Position - mRNA 189 -- 216@LB@Position - sRNA 8 -- 31@LB@Position Seed - mRNA 210 -- 216@LB@Position Seed - sRNA 8 -- 14@LB@ |
152 |
0.01445 |
0.3104 |
b0385 |
yaiC |
-12.21 |
0.050169 |
39 -- 67 |
12 -- 42 |
diguanylate cyclase cellulose regualtor |
|
_____________38_______________________________68\n_____________|________________________________|\n5'-CAA...CAACA_______________U______C_________UUAUG...CCG-3'\n______________AUCUCUGAA___AGG_GAUGAU_GUAAUAAGU\n______________|||||||||___|||_||||||_:|||:||:|\n______________UAGAGACUU___UCC_CUACUA_UAUUGUUUA\n3'-UUU...UAAAG_________AAG__________C_________CGCGC...AAG-5'\n_____________|________________________________|\n_____________43_______________________________11\n |
40 -- 46 |
35 -- 41 |
-28.8147 kcal/mol |
7.19368 kcal/mol |
9.40905 kcal/mol |
38 68@LB@ | |@LB@5'-CAA...CAACA U C UUAUG...CCG-3'@LB@ AUCUCUGAA AGG GAUGAU GUAAUAAGU@LB@ ||||||||| ||| |||||| :|||:||:|@LB@ UAGAGACUU UCC CUACUA UAUUGUUUA@LB@3'-UUU...UAAAG AAG C CGCGC...AAG-5'@LB@ | |@LB@ 43 11@LB@@LB@@LB@Energy -12.21 kcal/mol@LB@Hybridization Energy -28.8147 kcal/mol@LB@Unfolding Energy - mRNA 7.19368 kcal/mol@LB@Unfolding Energy - sRNA 9.40905 kcal/mol@LB@@LB@Position - mRNA 39 -- 67@LB@Position - sRNA 12 -- 42@LB@Position Seed - mRNA 40 -- 46@LB@Position Seed - sRNA 35 -- 41@LB@ |
153 |
0.0145 |
0.3104 |
b3866 |
yihI |
-12.31 |
0.048207 |
234 -- 252 |
5 -- 21 |
activator of Der GTPase |
|
_____________233_________________253\n_____________|___________________|\n5'-GAA...GCAAA___CAU_____A_______GAAAA...GUC-3'\n______________GGU___GCAAA_GCGCGUC\n______________|:|___:||||_|||||||\n______________CUA___UGUUU_CGCGCAG\n3'-UUU...UACUA___U_______A_______AAAG-5'\n_____________|___________________|\n_____________22__________________4\n |
246 -- 252 |
5 -- 11 |
-18.8767 kcal/mol |
5.31745 kcal/mol |
1.24955 kcal/mol |
233 253@LB@ | |@LB@5'-GAA...GCAAA CAU A GAAAA...GUC-3'@LB@ GGU GCAAA GCGCGUC@LB@ |:| :|||| |||||||@LB@ CUA UGUUU CGCGCAG@LB@3'-UUU...UACUA U A AAAG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -12.31 kcal/mol@LB@Hybridization Energy -18.8767 kcal/mol@LB@Unfolding Energy - mRNA 5.31745 kcal/mol@LB@Unfolding Energy - sRNA 1.24955 kcal/mol@LB@@LB@Position - mRNA 234 -- 252@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 246 -- 252@LB@Position Seed - sRNA 5 -- 11@LB@ |
154 |
0.01456 |
0.3104 |
b2048 |
cpsG |
-9.02 |
0.175967 |
42 -- 71 |
4 -- 44 |
phosphomannomutase |
|
_____________41________________________________________72\n_____________|_________________________________________|\n5'-GGG...GGCUC___________GA___________UG_______________CGCGG...GCG-3'\n______________UUAUCUC_GAA_____GGAUGAUG_________GUGCGUUU\n______________|:|||||_|||_____||||||||_________|:||||:|\n______________AGUAGAG_CUU_____CCUACUAC_________CGCGCAGA\n3'-UUU...UUUAA_______A___AAGUC________UAUUGUUUA________AAG-5'\n_____________|_________________________________________|\n_____________45________________________________________3\n |
65 -- 71 |
4 -- 10 |
-28.9111 kcal/mol |
10.4373 kcal/mol |
9.45546 kcal/mol |
41 72@LB@ | |@LB@5'-GGG...GGCUC GA UG CGCGG...GCG-3'@LB@ UUAUCUC GAA GGAUGAUG GUGCGUUU@LB@ |:||||| ||| |||||||| |:||||:|@LB@ AGUAGAG CUU CCUACUAC CGCGCAGA@LB@3'-UUU...UUUAA A AAGUC UAUUGUUUA AAG-5'@LB@ | |@LB@ 45 3@LB@@LB@@LB@Energy -9.02 kcal/mol@LB@Hybridization Energy -28.9111 kcal/mol@LB@Unfolding Energy - mRNA 10.4373 kcal/mol@LB@Unfolding Energy - sRNA 9.45546 kcal/mol@LB@@LB@Position - mRNA 42 -- 71@LB@Position - sRNA 4 -- 44@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 4 -- 10@LB@ |
155 |
0.0146 |
0.3104 |
b2614 |
grpE |
-10.46 |
0.101070 |
105 -- 125 |
1 -- 22 |
heat shock protein |
|
_____________104____________________126\n_____________|______________________|\n5'-GAG...AAGAU______________A__GC___CCUUG...CUG-3'\n______________UGAUGACAA_UGUG_GU__UUC\n______________||||:||||_||:|_||__|||\n______________ACUAUUGUU_ACGC_CA__AAG\n3'-UUU...CUACU_________U____G__GA___-5'\n_____________|_____________________|\n_____________23____________________1\n |
107 -- 113 |
14 -- 20 |
-17.1017 kcal/mol |
5.37697 kcal/mol |
1.25963 kcal/mol |
104 126@LB@ | |@LB@5'-GAG...AAGAU A GC CCUUG...CUG-3'@LB@ UGAUGACAA UGUG GU UUC@LB@ ||||:|||| ||:| || |||@LB@ ACUAUUGUU ACGC CA AAG@LB@3'-UUU...CUACU U G GA -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -10.46 kcal/mol@LB@Hybridization Energy -17.1017 kcal/mol@LB@Unfolding Energy - mRNA 5.37697 kcal/mol@LB@Unfolding Energy - sRNA 1.25963 kcal/mol@LB@@LB@Position - mRNA 105 -- 125@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 107 -- 113@LB@Position Seed - sRNA 14 -- 20@LB@ |
156 |
0.01464 |
0.3104 |
b4105 |
phnD |
-8.45 |
0.216438 |
196 -- 209 |
4 -- 18 |
phosphonate ABC transporter periplasmic binding protein |
|
_____________195_____________210\n_____________|_______________|\n5'-CCG...AGGAA________AA_____AAGAU...UGA-3'\n______________AACGAAUG__CG_CU\n______________|||:||||__||_||\n______________UUGUUUAC__GC_GA\n3'-UUU...UACUA________GC__A__AAG-5'\n_____________|_______________|\n_____________19______________3\n |
197 -- 203 |
11 -- 17 |
-10.9184 kcal/mol |
1.23392 kcal/mol |
1.22995 kcal/mol |
195 210@LB@ | |@LB@5'-CCG...AGGAA AA AAGAU...UGA-3'@LB@ AACGAAUG CG CU@LB@ |||:|||| || ||@LB@ UUGUUUAC GC GA@LB@3'-UUU...UACUA GC A AAG-5'@LB@ | |@LB@ 19 3@LB@@LB@@LB@Energy -8.45 kcal/mol@LB@Hybridization Energy -10.9184 kcal/mol@LB@Unfolding Energy - mRNA 1.23392 kcal/mol@LB@Unfolding Energy - sRNA 1.22995 kcal/mol@LB@@LB@Position - mRNA 196 -- 209@LB@Position - sRNA 4 -- 18@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 11 -- 17@LB@ |
157 |
0.01467 |
0.3104 |
b0906 |
ycaP |
-12.44 |
0.045773 |
54 -- 69 |
5 -- 18 |
UPF0702 family putative inner membrane protein |
|
_____________53_______________70\n_____________|________________|\n5'-AGU...CCGGG_________UU_____AUGAA...UCU-3'\n______________GAUAAAUGU__GCGUC\n______________:|:|||||:__|||||\n______________UUGUUUACG__CGCAG\n3'-UUU...UACUA________________AAAG-5'\n_____________|________________|\n_____________19_______________4\n |
56 -- 62 |
10 -- 16 |
-16.0437 kcal/mol |
2.38303 kcal/mol |
1.2243 kcal/mol |
53 70@LB@ | |@LB@5'-AGU...CCGGG UU AUGAA...UCU-3'@LB@ GAUAAAUGU GCGUC@LB@ :|:|||||: |||||@LB@ UUGUUUACG CGCAG@LB@3'-UUU...UACUA AAAG-5'@LB@ | |@LB@ 19 4@LB@@LB@@LB@Energy -12.44 kcal/mol@LB@Hybridization Energy -16.0437 kcal/mol@LB@Unfolding Energy - mRNA 2.38303 kcal/mol@LB@Unfolding Energy - sRNA 1.2243 kcal/mol@LB@@LB@Position - mRNA 54 -- 69@LB@Position - sRNA 5 -- 18@LB@Position Seed - mRNA 56 -- 62@LB@Position Seed - sRNA 10 -- 16@LB@ |