106 |
0.005253 |
0.1728 |
stm1172 |
flgM |
-15.84 |
0.086212 |
196 -- 254 |
36 -- 82 |
anti-sigma-28 factor FlgM |
|
_____________195________________255\n_____________|__________________|\n5'-GGC...GACGC__G_______________CCGGU...CGU-3'\n______________GC_AAAC_CAGCGACACG\n______________||_||||_||:|:||||:\n______________CG_UUUG_GUUGUUGUGU\n3'-UUU...GUUAA_______U__________UGUAG...UCA-5'\n_____________|__________________|\n_____________83_________________35\n |
263 -- 269 |
74 -- 80 |
-18.0556 kcal/mol |
5.48392 kcal/mol |
3.73436 kcal/mol |
195 255@LB@ | |@LB@5'-GGC...GACGC G CCGGU...CGU-3'@LB@ GC AAAC CAGCGACACG@LB@ || |||| ||:|:||||:@LB@ CG UUUG GUUGUUGUGU@LB@3'-UUU...GUUAA U UGUAG...UCA-5'@LB@ | |@LB@ 83 35@LB@@LB@@LB@Energy -15.84 kcal/mol@LB@Hybridization Energy -18.0556 kcal/mol@LB@Unfolding Energy - mRNA 5.48392 kcal/mol@LB@Unfolding Energy - sRNA 3.73436 kcal/mol@LB@@LB@Position - mRNA 196 -- 254@LB@Position - sRNA 36 -- 82@LB@Position Seed - mRNA 263 -- 269@LB@Position Seed - sRNA 74 -- 80@LB@ |
137 |
0.006825 |
0.1774 |
stm1196 |
acpP |
-14.14 |
0.161333 |
197 -- 223 |
36 -- 60 |
acyl carrier protein |
|
_____________196___________________________________________224\n_____________|_____________________________________________|\n5'-ACU...AGAAC_______GAAA_____C____A____CU__GCGUUAA________AAGUA...UGG-3'\n______________GCGUUAA____AUUAU_GGCG_ACAG__GG_______GCAGGAAG\n______________:|:||||____|:|||_|:|:_||||__||_______:|||||||\n______________UGUAAUU____UGAUA_CUGU_UGUC__CC_______UGUCCUUC\n3'-UUU...CACGA_______AG_______C____C________AUUUACA________ACUUU...UCA-5'\n_____________|_____________________________________________|\n_____________61____________________________________________35\n |
258 -- 264 |
137 -- 143 |
-28.6095 kcal/mol |
10.3633 kcal/mol |
7.13805 kcal/mol |
196 224@LB@ | |@LB@5'-ACU...AGAAC GAAA C A CU GCGUUAA AAGUA...UGG-3'@LB@ GCGUUAA AUUAU GGCG ACAG GG GCAGGAAG@LB@ :|:|||| |:||| |:|: |||| || :|||||||@LB@ UGUAAUU UGAUA CUGU UGUC CC UGUCCUUC@LB@3'-UUU...CACGA AG C C AUUUACA ACUUU...UCA-5'@LB@ | |@LB@ 61 35@LB@@LB@@LB@Energy -14.14 kcal/mol@LB@Hybridization Energy -28.6095 kcal/mol@LB@Unfolding Energy - mRNA 10.3633 kcal/mol@LB@Unfolding Energy - sRNA 7.13805 kcal/mol@LB@@LB@Position - mRNA 197 -- 223@LB@Position - sRNA 36 -- 60@LB@Position Seed - mRNA 258 -- 264@LB@Position Seed - sRNA 137 -- 143@LB@ |
29 |
0.0007392 |
0.08814 |
stm3096 |
yqgE |
-16.45 |
0.068552 |
198 -- 251 |
37 -- 84 |
DUF179 domain-containing protein |
|
_____________197___________252\n_____________|_____________|\n5'-UGG...UAUAU_____________CAGGA...GCG-3'\n______________UUGCGAGCACAAC\n______________||||:|:||||||\n______________AACGUUUGUGUUG\n3'-UUU...UGGUU_____________UUGUG...UCA-5'\n_____________|_____________|\n_____________85____________36\n |
284 -- 290 |
80 -- 86 |
-18.5161 kcal/mol |
2.82597 kcal/mol |
3.5889 kcal/mol |
197 252@LB@ | |@LB@5'-UGG...UAUAU CAGGA...GCG-3'@LB@ UUGCGAGCACAAC@LB@ ||||:|:||||||@LB@ AACGUUUGUGUUG@LB@3'-UUU...UGGUU UUGUG...UCA-5'@LB@ | |@LB@ 85 36@LB@@LB@@LB@Energy -16.45 kcal/mol@LB@Hybridization Energy -18.5161 kcal/mol@LB@Unfolding Energy - mRNA 2.82597 kcal/mol@LB@Unfolding Energy - sRNA 3.5889 kcal/mol@LB@@LB@Position - mRNA 198 -- 251@LB@Position - sRNA 37 -- 84@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 80 -- 86@LB@ |
67 |
0.003193 |
0.1596 |
stm0122 |
ftsI |
-11.87 |
0.349270 |
199 -- 241 |
52 -- 90 |
peptidoglycan glycosyltransferase FtsI |
|
_____________198_______________________242\n_____________|_________________________|\n5'-GUU...CGCGA____UUG_____UG___________CUGAU...UGG-3'\n______________UGCA___GACAU__AAUGGCGCAAC\n______________||||___:|||:__||:::|:||||\n______________ACGU___UUGUG__UUGUUGUGUUG\n3'-UUU...GGUUA_________________________UAGUG...UCA-5'\n_____________|_________________________|\n_____________91________________________51\n |
62 -- 68 |
72 -- 78 |
-17.673 kcal/mol |
4.85802 kcal/mol |
3.80548 kcal/mol |
198 242@LB@ | |@LB@5'-GUU...CGCGA UUG UG CUGAU...UGG-3'@LB@ UGCA GACAU AAUGGCGCAAC@LB@ |||| :|||: ||:::|:||||@LB@ ACGU UUGUG UUGUUGUGUUG@LB@3'-UUU...GGUUA UAGUG...UCA-5'@LB@ | |@LB@ 91 51@LB@@LB@@LB@Energy -11.87 kcal/mol@LB@Hybridization Energy -17.673 kcal/mol@LB@Unfolding Energy - mRNA 4.85802 kcal/mol@LB@Unfolding Energy - sRNA 3.80548 kcal/mol@LB@@LB@Position - mRNA 199 -- 241@LB@Position - sRNA 52 -- 90@LB@Position Seed - mRNA 62 -- 68@LB@Position Seed - sRNA 72 -- 78@LB@ |
157 |
0.008234 |
0.1845 |
stm0693 |
fur |
-16.04 |
0.080078 |
199 -- 253 |
31 -- 90 |
ferric iron uptake transcriptional regulator |
|
_____________198________________________254\n_____________|__________________________|\n5'-GCA...AUUCC___U___UG__________C______AAGAA...ACG-3'\n______________GCA_GAC__ACAACAAUAC_GCAUUA\n______________|||_:||__|||||||:||_:|||:|\n______________CGU_UUG__UGUUGUUGUG_UGUAGU\n3'-UUU...GUUAA___________________U______GUUGG...UCA-5'\n_____________|__________________________|\n_____________91_________________________30\n |
211 -- 217 |
75 -- 81 |
-20.9388 kcal/mol |
2.89423 kcal/mol |
5.29697 kcal/mol |
198 254@LB@ | |@LB@5'-GCA...AUUCC U UG C AAGAA...ACG-3'@LB@ GCA GAC ACAACAAUAC GCAUUA@LB@ ||| :|| |||||||:|| :|||:|@LB@ CGU UUG UGUUGUUGUG UGUAGU@LB@3'-UUU...GUUAA U GUUGG...UCA-5'@LB@ | |@LB@ 91 30@LB@@LB@@LB@Energy -16.04 kcal/mol@LB@Hybridization Energy -20.9388 kcal/mol@LB@Unfolding Energy - mRNA 2.89423 kcal/mol@LB@Unfolding Energy - sRNA 5.29697 kcal/mol@LB@@LB@Position - mRNA 199 -- 253@LB@Position - sRNA 31 -- 90@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 75 -- 81@LB@ |
21 |
0.000482 |
0.08173 |
stm1057 |
pepN |
-18.92 |
0.026522 |
201 -- 244 |
36 -- 81 |
aminopeptidase N |
|
_____________200______________245\n_____________|________________|\n5'-CUU...UUUAU___________C____GCCAA...AAA-3'\n______________GACACAACAGC_ACAA\n______________:||||||||:|_||||\n______________UUGUGUUGUUG_UGUU\n3'-UUU...AACGU________________GUAGU...UCA-5'\n_____________|________________|\n_____________82_______________35\n |
207 -- 213 |
77 -- 83 |
-17.6161 kcal/mol |
1.99149 kcal/mol |
3.56182 kcal/mol |
200 245@LB@ | |@LB@5'-CUU...UUUAU C GCCAA...AAA-3'@LB@ GACACAACAGC ACAA@LB@ :||||||||:| ||||@LB@ UUGUGUUGUUG UGUU@LB@3'-UUU...AACGU GUAGU...UCA-5'@LB@ | |@LB@ 82 35@LB@@LB@@LB@Energy -18.92 kcal/mol@LB@Hybridization Energy -17.6161 kcal/mol@LB@Unfolding Energy - mRNA 1.99149 kcal/mol@LB@Unfolding Energy - sRNA 3.56182 kcal/mol@LB@@LB@Position - mRNA 201 -- 244@LB@Position - sRNA 36 -- 81@LB@Position Seed - mRNA 207 -- 213@LB@Position Seed - sRNA 77 -- 83@LB@ |
8 |
9.263e-05 |
0.04123 |
stm0369 |
prpC |
-29.42 |
0.000431 |
202 -- 269 |
31 -- 91 |
2-methylcitrate synthase |
|
_____________201______________________________________________________________270\n_____________|________________________________________________________________|\n5'-AAC...CAAUA__A_____________C_U___AA_____A__CAU____UU______AAAAA_____U______UUUCC...GUA-3'\n______________UG_CAGACACGACGAU_C_GCA__ACAAC_CG___GUCA__AAGCCU_____AUCGG__CGCGC\n______________||_||:||||:||:|:_|_:||__|||||_||___|:||__|||||:_____|||:|__|:|||\n______________AC_GUUUGUGUUGUUG_G_UGU__UGUUG_GC___CGGU__UUCGGG_____UAGUC__GUGCG\n3'-UUU...GGUUA________________U_U___AG________AUU____U_________________UU_____UAAGG...UCA-5'\n_____________|________________________________________________________________|\n_____________92_______________________________________________________________30\n |
211 -- 217 |
77 -- 83 |
-51.7305 kcal/mol |
8.34164 kcal/mol |
22.503 kcal/mol |
201 270@LB@ | |@LB@5'-AAC...CAAUA A C U AA A CAU UU AAAAA U UUUCC...GUA-3'@LB@ UG CAGACACGACGAU C GCA ACAAC CG GUCA AAGCCU AUCGG CGCGC@LB@ || ||:||||:||:|: | :|| ||||| || |:|| |||||: |||:| |:|||@LB@ AC GUUUGUGUUGUUG G UGU UGUUG GC CGGU UUCGGG UAGUC GUGCG@LB@3'-UUU...GGUUA U U AG AUU U UU UAAGG...UCA-5'@LB@ | |@LB@ 92 30@LB@@LB@@LB@Energy -29.42 kcal/mol@LB@Hybridization Energy -51.7305 kcal/mol@LB@Unfolding Energy - mRNA 8.34164 kcal/mol@LB@Unfolding Energy - sRNA 22.503 kcal/mol@LB@@LB@Position - mRNA 202 -- 269@LB@Position - sRNA 31 -- 91@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 77 -- 83@LB@ |
79 |
0.003723 |
0.1596 |
stm1723 |
trpE |
-16.56 |
0.065817 |
202 -- 256 |
41 -- 91 |
anthranilate synthase subunit I |
|
_____________201__________________257\n_____________|____________________|\n5'-UGA...AAAUG__________UU________CGGUU...CGG-3'\n______________GCAGCGACAU__GCAUUACA\n______________:||:|:|||:__:|||:|||\n______________UGUUGUUGUG__UGUAGUGU\n3'-UUU...GUUUG__________U_________UGGCA...UCA-5'\n_____________|____________________|\n_____________92___________________40\n |
78 -- 84 |
66 -- 72 |
-20.8013 kcal/mol |
5.41524 kcal/mol |
5.89278 kcal/mol |
201 257@LB@ | |@LB@5'-UGA...AAAUG UU CGGUU...CGG-3'@LB@ GCAGCGACAU GCAUUACA@LB@ :||:|:|||: :|||:|||@LB@ UGUUGUUGUG UGUAGUGU@LB@3'-UUU...GUUUG U UGGCA...UCA-5'@LB@ | |@LB@ 92 40@LB@@LB@@LB@Energy -16.56 kcal/mol@LB@Hybridization Energy -20.8013 kcal/mol@LB@Unfolding Energy - mRNA 5.41524 kcal/mol@LB@Unfolding Energy - sRNA 5.89278 kcal/mol@LB@@LB@Position - mRNA 202 -- 256@LB@Position - sRNA 41 -- 91@LB@Position Seed - mRNA 78 -- 84@LB@Position Seed - sRNA 66 -- 72@LB@ |
168 |
0.009144 |
0.1938 |
stm3609 |
yhjE |
-18.08 |
0.036777 |
202 -- 261 |
35 -- 91 |
MFS transporter |
|
_____________201__________________________________262\n_____________|____________________________________|\n5'-UAA...UAGUA_______A__C_____________U_____A_____AGGAA...UUG-3'\n______________UGCAAGC_AC_GC__CACAACA_C_CGACC_UGAGC\n______________|||||:|_||_:|__|||||||_|_|:|||_|:|||\n______________ACGUUUG_UG_UG__GUGUUGU_G_GUUGG_AUUCG\n3'-UUU...GGUUA__________U__UU_______A_U_____C_____GUUUU...UCA-5'\n_____________|____________________________________|\n_____________92___________________________________34\n |
215 -- 221 |
71 -- 77 |
-32.2191 kcal/mol |
4.27941 kcal/mol |
11.5198 kcal/mol |
201 262@LB@ | |@LB@5'-UAA...UAGUA A C U A AGGAA...UUG-3'@LB@ UGCAAGC AC GC CACAACA C CGACC UGAGC@LB@ |||||:| || :| ||||||| | |:||| |:|||@LB@ ACGUUUG UG UG GUGUUGU G GUUGG AUUCG@LB@3'-UUU...GGUUA U UU A U C GUUUU...UCA-5'@LB@ | |@LB@ 92 34@LB@@LB@@LB@Energy -18.08 kcal/mol@LB@Hybridization Energy -32.2191 kcal/mol@LB@Unfolding Energy - mRNA 4.27941 kcal/mol@LB@Unfolding Energy - sRNA 11.5198 kcal/mol@LB@@LB@Position - mRNA 202 -- 261@LB@Position - sRNA 35 -- 91@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 71 -- 77@LB@ |
99 |
0.004942 |
0.1728 |
stm0604 |
ybdM |
-18.77 |
0.028138 |
203 -- 249 |
36 -- 81 |
similar to E. coli orf hypothetical protein (AAC73702.1); Blastp hit to AAC73702.1 (209 aa) 77% identity in aa 5 - 209 |
|
_____________202___________________250\n_____________|_____________________|\n5'-AAA...CUUAU______C______________AAAUA...AUA-3'\n______________GCAACA_CGAC_UCACAACCG\n______________:|||||_|:||_|||||||||\n______________UGUUGU_GUUG_AGUGUUGGC\n3'-UUU...UGUGU___________U_________AUUCG...UCA-5'\n_____________|_____________________|\n_____________82____________________35\n |
216 -- 222 |
62 -- 68 |
-25.0091 kcal/mol |
1.37283 kcal/mol |
7.72388 kcal/mol |
202 250@LB@ | |@LB@5'-AAA...CUUAU C AAAUA...AUA-3'@LB@ GCAACA CGAC UCACAACCG@LB@ :||||| |:|| |||||||||@LB@ UGUUGU GUUG AGUGUUGGC@LB@3'-UUU...UGUGU U AUUCG...UCA-5'@LB@ | |@LB@ 82 35@LB@@LB@@LB@Energy -18.77 kcal/mol@LB@Hybridization Energy -25.0091 kcal/mol@LB@Unfolding Energy - mRNA 1.37283 kcal/mol@LB@Unfolding Energy - sRNA 7.72388 kcal/mol@LB@@LB@Position - mRNA 203 -- 249@LB@Position - sRNA 36 -- 81@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 62 -- 68@LB@ |