126 |
0.01241 |
0.3104 |
b4379 |
yjjW |
-11.82 |
0.058804 |
207 -- 217 |
8 -- 18 |
putative pyruvate formate lyase activating enzyme |
|
_____________206_________218\n_____________|___________|\n5'-CGG...UGAAC___________UUUAG...UGC-3'\n______________AGCAGAUGCGC\n______________|:||:||||||\n______________UUGUUUACGCG\n3'-UUU...UACUA___________CAGAAAG-5'\n_____________|___________|\n_____________19__________7\n |
211 -- 217 |
8 -- 14 |
-16.9543 kcal/mol |
3.92931 kcal/mol |
1.20363 kcal/mol |
206 218@LB@ | |@LB@5'-CGG...UGAAC UUUAG...UGC-3'@LB@ AGCAGAUGCGC@LB@ |:||:||||||@LB@ UUGUUUACGCG@LB@3'-UUU...UACUA CAGAAAG-5'@LB@ | |@LB@ 19 7@LB@@LB@@LB@Energy -11.82 kcal/mol@LB@Hybridization Energy -16.9543 kcal/mol@LB@Unfolding Energy - mRNA 3.92931 kcal/mol@LB@Unfolding Energy - sRNA 1.20363 kcal/mol@LB@@LB@Position - mRNA 207 -- 217@LB@Position - sRNA 8 -- 18@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 8 -- 14@LB@ |
128 |
0.01258 |
0.3104 |
b0677 |
nagA |
-7.18 |
0.336330 |
272 -- 297 |
1 -- 22 |
N-acetylglucosamine-6-phosphate deacetylase |
|
_____________271________________________298\n_____________|__________________________|\n5'-AAC...AUCGC_______CU___UAAAA______G__CGG-3'\n______________UGAUGGC__GAU_____GCGUCU_UC\n______________||||::|__:||_____||||||_||\n______________ACUAUUG__UUA_____CGCAGA_AG\n3'-UUU...CUACU_______U____CG_________A__-5'\n_____________|_________________________|\n_____________23________________________1\n |
272 -- 278 |
16 -- 22 |
-15.3811 kcal/mol |
6.93964 kcal/mol |
1.25963 kcal/mol |
271 298@LB@ | |@LB@5'-AAC...AUCGC CU UAAAA G CGG-3'@LB@ UGAUGGC GAU GCGUCU UC@LB@ ||||::| :|| |||||| ||@LB@ ACUAUUG UUA CGCAGA AG@LB@3'-UUU...CUACU U CG A -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -7.18 kcal/mol@LB@Hybridization Energy -15.3811 kcal/mol@LB@Unfolding Energy - mRNA 6.93964 kcal/mol@LB@Unfolding Energy - sRNA 1.25963 kcal/mol@LB@@LB@Position - mRNA 272 -- 297@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 272 -- 278@LB@Position Seed - sRNA 16 -- 22@LB@ |
129 |
0.01261 |
0.3104 |
b3025 |
qseB |
-10.92 |
0.084347 |
141 -- 152 |
5 -- 17 |
quorum sensing DNA-binding response regulator in two-component regulatory system with QseC |
|
_____________140___________153\n_____________|_____________|\n5'-GUG...GCUGU_____________ACAAC...GUC-3'\n______________ACAGA_GCGCGUU\n______________|||:|_||||||:\n______________UGUUU_CGCGCAG\n3'-UUU...ACUAU_____A_______AAAG-5'\n_____________|_____________|\n_____________18____________4\n |
146 -- 152 |
5 -- 11 |
-15.7823 kcal/mol |
3.63703 kcal/mol |
1.22241 kcal/mol |
140 153@LB@ | |@LB@5'-GUG...GCUGU ACAAC...GUC-3'@LB@ ACAGA GCGCGUU@LB@ |||:| ||||||:@LB@ UGUUU CGCGCAG@LB@3'-UUU...ACUAU A AAAG-5'@LB@ | |@LB@ 18 4@LB@@LB@@LB@Energy -10.92 kcal/mol@LB@Hybridization Energy -15.7823 kcal/mol@LB@Unfolding Energy - mRNA 3.63703 kcal/mol@LB@Unfolding Energy - sRNA 1.22241 kcal/mol@LB@@LB@Position - mRNA 141 -- 152@LB@Position - sRNA 5 -- 17@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 5 -- 11@LB@ |
130 |
0.01263 |
0.3104 |
b1952 |
dsrB |
-7.17 |
0.338083 |
230 -- 240 |
7 -- 18 |
uncharacterized protein |
|
_____________229__________241\n_____________|____________|\n5'-CGU...GUCAA____________GUCCG...ACC-3'\n______________AACGGAUG_GCG\n______________|||::|||_|||\n______________UUGUUUAC_CGC\n3'-UUU...UACUA________G___AGAAAG-5'\n_____________|____________|\n_____________19___________6\n |
231 -- 237 |
11 -- 17 |
-11.9456 kcal/mol |
3.57064 kcal/mol |
1.20891 kcal/mol |
229 241@LB@ | |@LB@5'-CGU...GUCAA GUCCG...ACC-3'@LB@ AACGGAUG GCG@LB@ |||::||| |||@LB@ UUGUUUAC CGC@LB@3'-UUU...UACUA G AGAAAG-5'@LB@ | |@LB@ 19 6@LB@@LB@@LB@Energy -7.17 kcal/mol@LB@Hybridization Energy -11.9456 kcal/mol@LB@Unfolding Energy - mRNA 3.57064 kcal/mol@LB@Unfolding Energy - sRNA 1.20891 kcal/mol@LB@@LB@Position - mRNA 230 -- 240@LB@Position - sRNA 7 -- 18@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 11 -- 17@LB@ |
131 |
0.01264 |
0.3104 |
b3412 |
bioH |
-11.05 |
0.080071 |
12 -- 32 |
7 -- 31 |
pimeloyl-ACP methyl ester carboxylesterase |
|
_____________11________________________33\n_____________|_________________________|\n5'-GGC...GACCG______A__________________GCGGG...ACG-3'\n______________CAGGGA_GAUGG____GAGUGUGUG\n______________||||||_||||:____:|:||:|:|\n______________GUCCCU_CUACU____UUUACGCGC\n3'-UUU...CUUAA______A_____AUUG_________AGAAAG-5'\n_____________|_________________________|\n_____________32________________________6\n |
26 -- 32 |
7 -- 13 |
-25.3011 kcal/mol |
6.49654 kcal/mol |
7.75103 kcal/mol |
11 33@LB@ | |@LB@5'-GGC...GACCG A GCGGG...ACG-3'@LB@ CAGGGA GAUGG GAGUGUGUG@LB@ |||||| ||||: :|:||:|:|@LB@ GUCCCU CUACU UUUACGCGC@LB@3'-UUU...CUUAA A AUUG AGAAAG-5'@LB@ | |@LB@ 32 6@LB@@LB@@LB@Energy -11.05 kcal/mol@LB@Hybridization Energy -25.3011 kcal/mol@LB@Unfolding Energy - mRNA 6.49654 kcal/mol@LB@Unfolding Energy - sRNA 7.75103 kcal/mol@LB@@LB@Position - mRNA 12 -- 32@LB@Position - sRNA 7 -- 31@LB@Position Seed - mRNA 26 -- 32@LB@Position Seed - sRNA 7 -- 13@LB@ |
132 |
0.01286 |
0.3104 |
b3176 |
glmM |
-8.35 |
0.224806 |
246 -- 258 |
8 -- 20 |
phosphoglucosamine mutase |
|
_____________245___________259\n_____________|_____________|\n5'-GUU...GUCGU____G________CGAUC...CGG-3'\n______________GUAG_GGAUGCGC\n______________:||:_::||||||\n______________UAUU_UUUACGCG\n3'-UUU...ACUAC____G________CAGAAAG-5'\n_____________|_____________|\n_____________21____________7\n |
252 -- 258 |
8 -- 14 |
-14.3134 kcal/mol |
4.73041 kcal/mol |
1.23367 kcal/mol |
245 259@LB@ | |@LB@5'-GUU...GUCGU G CGAUC...CGG-3'@LB@ GUAG GGAUGCGC@LB@ :||: ::||||||@LB@ UAUU UUUACGCG@LB@3'-UUU...ACUAC G CAGAAAG-5'@LB@ | |@LB@ 21 7@LB@@LB@@LB@Energy -8.35 kcal/mol@LB@Hybridization Energy -14.3134 kcal/mol@LB@Unfolding Energy - mRNA 4.73041 kcal/mol@LB@Unfolding Energy - sRNA 1.23367 kcal/mol@LB@@LB@Position - mRNA 246 -- 258@LB@Position - sRNA 8 -- 20@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 8 -- 14@LB@ |
133 |
0.01287 |
0.3104 |
b3179 |
rlmE |
-8.60 |
0.205247 |
24 -- 43 |
1 -- 17 |
23S rRNA U2552 2'-O-ribose methyltransferase SAM-dependent |
|
_____________23___________________44\n_____________|____________________|\n5'-GCC...CUUGA__________CAGAC_____AGGUG...CCC-3'\n______________GCGGAUGUGC_____CUUUC\n______________:|::|||:||_____|||||\n______________UGUUUACGCG_____GAAAG\n3'-UUU...ACUAU__________CA________-5'\n_____________|___________________|\n_____________18__________________1\n |
27 -- 33 |
8 -- 14 |
-16.3409 kcal/mol |
6.50016 kcal/mol |
1.23994 kcal/mol |
23 44@LB@ | |@LB@5'-GCC...CUUGA CAGAC AGGUG...CCC-3'@LB@ GCGGAUGUGC CUUUC@LB@ :|::|||:|| |||||@LB@ UGUUUACGCG GAAAG@LB@3'-UUU...ACUAU CA -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -8.60 kcal/mol@LB@Hybridization Energy -16.3409 kcal/mol@LB@Unfolding Energy - mRNA 6.50016 kcal/mol@LB@Unfolding Energy - sRNA 1.23994 kcal/mol@LB@@LB@Position - mRNA 24 -- 43@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 27 -- 33@LB@Position Seed - sRNA 8 -- 14@LB@ |
134 |
0.01294 |
0.3104 |
b2234 |
nrdA |
-13.57 |
0.028625 |
217 -- 231 |
7 -- 22 |
ribonucleoside-diphosphate reductase 1 alpha subunit |
|
_____________216______________232\n_____________|________________|\n5'-GAC...UCUGC________________ACGGU...UGC-3'\n______________UGGUGACAAA_GCGCG\n______________||:|:|||||_|||||\n______________ACUAUUGUUU_CGCGC\n3'-UUU...CUACU__________A_____AGAAAG-5'\n_____________|________________|\n_____________23_______________6\n |
220 -- 226 |
13 -- 19 |
-19.6051 kcal/mol |
4.78775 kcal/mol |
1.24379 kcal/mol |
216 232@LB@ | |@LB@5'-GAC...UCUGC ACGGU...UGC-3'@LB@ UGGUGACAAA GCGCG@LB@ ||:|:||||| |||||@LB@ ACUAUUGUUU CGCGC@LB@3'-UUU...CUACU A AGAAAG-5'@LB@ | |@LB@ 23 6@LB@@LB@@LB@Energy -13.57 kcal/mol@LB@Hybridization Energy -19.6051 kcal/mol@LB@Unfolding Energy - mRNA 4.78775 kcal/mol@LB@Unfolding Energy - sRNA 1.24379 kcal/mol@LB@@LB@Position - mRNA 217 -- 231@LB@Position - sRNA 7 -- 22@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 13 -- 19@LB@ |
135 |
0.01297 |
0.3104 |
b3409 |
feoB |
-9.25 |
0.161231 |
74 -- 82 |
5 -- 13 |
ferrous iron transporter protein B and GTP-binding protein; membrane protein |
|
_____________73________83\n_____________|_________|\n5'-CCG...AUGUG_________GCUCC...GGG-3'\n______________GUGCGCGUC\n______________:||||||||\n______________UACGCGCAG\n3'-UUU...UUGUU_________AAAG-5'\n_____________|_________|\n_____________14________4\n |
76 -- 82 |
5 -- 11 |
-15.2985 kcal/mol |
4.89519 kcal/mol |
1.15134 kcal/mol |
73 83@LB@ | |@LB@5'-CCG...AUGUG GCUCC...GGG-3'@LB@ GUGCGCGUC@LB@ :||||||||@LB@ UACGCGCAG@LB@3'-UUU...UUGUU AAAG-5'@LB@ | |@LB@ 14 4@LB@@LB@@LB@Energy -9.25 kcal/mol@LB@Hybridization Energy -15.2985 kcal/mol@LB@Unfolding Energy - mRNA 4.89519 kcal/mol@LB@Unfolding Energy - sRNA 1.15134 kcal/mol@LB@@LB@Position - mRNA 74 -- 82@LB@Position - sRNA 5 -- 13@LB@Position Seed - mRNA 76 -- 82@LB@Position Seed - sRNA 5 -- 11@LB@ |
136 |
0.01311 |
0.3104 |
b0694 |
kdpE |
-14.36 |
0.020608 |
275 -- 287 |
2 -- 14 |
response regulator in two-component regulatory system with KdpD |
|
_____________274___________288\n_____________|_____________|\n5'-ACG...GACGG_____________GAGGC...CGC-3'\n______________GAUGCGCGUCUUU\n______________:||||||||||||\n______________UUACGCGCAGAAA\n3'-UUU...AUUGU_____________G-5'\n_____________|_____________|\n_____________15____________1\n |
281 -- 287 |
2 -- 8 |
-20.3279 kcal/mol |
4.79291 kcal/mol |
1.17514 kcal/mol |
274 288@LB@ | |@LB@5'-ACG...GACGG GAGGC...CGC-3'@LB@ GAUGCGCGUCUUU@LB@ :||||||||||||@LB@ UUACGCGCAGAAA@LB@3'-UUU...AUUGU G-5'@LB@ | |@LB@ 15 1@LB@@LB@@LB@Energy -14.36 kcal/mol@LB@Hybridization Energy -20.3279 kcal/mol@LB@Unfolding Energy - mRNA 4.79291 kcal/mol@LB@Unfolding Energy - sRNA 1.17514 kcal/mol@LB@@LB@Position - mRNA 275 -- 287@LB@Position - sRNA 2 -- 14@LB@Position Seed - mRNA 281 -- 287@LB@Position Seed - sRNA 2 -- 8@LB@ |