121 |
0.01226 |
0.3104 |
b3209 |
elbB |
-12.57 |
0.043302 |
225 -- 240 |
4 -- 18 |
isoprenoid biosynthesis protein with amidotransferase-like domain |
|
_____________224______________241\n_____________|________________|\n5'-GCG...UUCUG__________G_____AUGAC...GUG-3'\n______________AGCGGAUGCG_CGUCU\n______________|:|::|||||_|||||\n______________UUGUUUACGC_GCAGA\n3'-UUU...UACUA________________AAG-5'\n_____________|________________|\n_____________19_______________3\n |
228 -- 234 |
9 -- 15 |
-20.315 kcal/mol |
6.5132 kcal/mol |
1.22995 kcal/mol |
224 241@LB@ | |@LB@5'-GCG...UUCUG G AUGAC...GUG-3'@LB@ AGCGGAUGCG CGUCU@LB@ |:|::||||| |||||@LB@ UUGUUUACGC GCAGA@LB@3'-UUU...UACUA AAG-5'@LB@ | |@LB@ 19 3@LB@@LB@@LB@Energy -12.57 kcal/mol@LB@Hybridization Energy -20.315 kcal/mol@LB@Unfolding Energy - mRNA 6.5132 kcal/mol@LB@Unfolding Energy - sRNA 1.22995 kcal/mol@LB@@LB@Position - mRNA 225 -- 240@LB@Position - sRNA 4 -- 18@LB@Position Seed - mRNA 228 -- 234@LB@Position Seed - sRNA 9 -- 15@LB@ |
122 |
0.01233 |
0.3104 |
b3599 |
mtlA |
-8.56 |
0.208645 |
247 -- 281 |
4 -- 32 |
mannitol-specific PTS enzyme: IIA IIB and IIC components |
|
_____________246_________________________________282\n_____________|___________________________________|\n5'-GAU...UUUCC____CAAC_________C_____AUCG________AUCGC...UCA-3'\n______________UCAG____AUGGUGAUG_CAAAU____GCGCGUUU\n______________||||____|||:||||:_|||||____||||||:|\n______________AGUC____UACUACUAU_GUUUA____CGCGCAGA\n3'-UUU...ACUUA____CC___________U_________________AAG-5'\n_____________|___________________________________|\n_____________33__________________________________3\n |
275 -- 281 |
4 -- 10 |
-27.4972 kcal/mol |
11.1013 kcal/mol |
7.84022 kcal/mol |
246 282@LB@ | |@LB@5'-GAU...UUUCC CAAC C AUCG AUCGC...UCA-3'@LB@ UCAG AUGGUGAUG CAAAU GCGCGUUU@LB@ |||| |||:||||: ||||| ||||||:|@LB@ AGUC UACUACUAU GUUUA CGCGCAGA@LB@3'-UUU...ACUUA CC U AAG-5'@LB@ | |@LB@ 33 3@LB@@LB@@LB@Energy -8.56 kcal/mol@LB@Hybridization Energy -27.4972 kcal/mol@LB@Unfolding Energy - mRNA 11.1013 kcal/mol@LB@Unfolding Energy - sRNA 7.84022 kcal/mol@LB@@LB@Position - mRNA 247 -- 281@LB@Position - sRNA 4 -- 32@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 4 -- 10@LB@ |
123 |
0.01235 |
0.3104 |
b0097 |
secM |
-7.65 |
0.286972 |
189 -- 203 |
7 -- 21 |
regulator of secA translation |
|
_____________188_____________204\n_____________|_______________|\n5'-UGG...AUCGG________UAA____AGUGG...CGC-3'\n______________GAUGGCAA___CGUG\n______________|||::|||___||:|\n______________CUAUUGUU___GCGC\n3'-UUU...UACUA________UAC____AGAAAG-5'\n_____________|_______________|\n_____________22______________6\n |
190 -- 196 |
14 -- 20 |
-12.5088 kcal/mol |
3.61266 kcal/mol |
1.24179 kcal/mol |
188 204@LB@ | |@LB@5'-UGG...AUCGG UAA AGUGG...CGC-3'@LB@ GAUGGCAA CGUG@LB@ |||::||| ||:|@LB@ CUAUUGUU GCGC@LB@3'-UUU...UACUA UAC AGAAAG-5'@LB@ | |@LB@ 22 6@LB@@LB@@LB@Energy -7.65 kcal/mol@LB@Hybridization Energy -12.5088 kcal/mol@LB@Unfolding Energy - mRNA 3.61266 kcal/mol@LB@Unfolding Energy - sRNA 1.24179 kcal/mol@LB@@LB@Position - mRNA 189 -- 203@LB@Position - sRNA 7 -- 21@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 14 -- 20@LB@ |
124 |
0.0124 |
0.3104 |
b1860 |
ruvB |
-8.20 |
0.236824 |
252 -- 265 |
8 -- 20 |
ATP-dependent DNA helicase component of RuvABC resolvasome |
|
_____________251____________266\n_____________|______________|\n5'-ACG...AAGAU_________C____CAUUC...GUC-3'\n______________GUAGCAGAU_GCGC\n______________:||:||:||_||||\n______________UAUUGUUUA_CGCG\n3'-UUU...ACUAC______________CAGAAAG-5'\n_____________|______________|\n_____________21_____________7\n |
252 -- 258 |
14 -- 20 |
-14.7986 kcal/mol |
5.36112 kcal/mol |
1.23367 kcal/mol |
251 266@LB@ | |@LB@5'-ACG...AAGAU C CAUUC...GUC-3'@LB@ GUAGCAGAU GCGC@LB@ :||:||:|| ||||@LB@ UAUUGUUUA CGCG@LB@3'-UUU...ACUAC CAGAAAG-5'@LB@ | |@LB@ 21 7@LB@@LB@@LB@Energy -8.20 kcal/mol@LB@Hybridization Energy -14.7986 kcal/mol@LB@Unfolding Energy - mRNA 5.36112 kcal/mol@LB@Unfolding Energy - sRNA 1.23367 kcal/mol@LB@@LB@Position - mRNA 252 -- 265@LB@Position - sRNA 8 -- 20@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 14 -- 20@LB@ |
125 |
0.01241 |
0.3104 |
b0002 |
thrA |
-8.21 |
0.235915 |
191 -- 205 |
9 -- 21 |
Bifunctional aspartokinase/homoserine dehydrogenase 1 |
|
_____________190_____________206\n_____________|_______________|\n5'-CCA...AACGA________CC_____AGUGU...UGG-3'\n______________GGUAACAA__AUGCG\n______________|:||||||__|||||\n______________CUAUUGUU__UACGC\n3'-UUU...UACUA_______________GCAGAAAG-5'\n_____________|_______________|\n_____________22______________8\n |
192 -- 198 |
14 -- 20 |
-12.9357 kcal/mol |
3.48482 kcal/mol |
1.23627 kcal/mol |
190 206@LB@ | |@LB@5'-CCA...AACGA CC AGUGU...UGG-3'@LB@ GGUAACAA AUGCG@LB@ |:|||||| |||||@LB@ CUAUUGUU UACGC@LB@3'-UUU...UACUA GCAGAAAG-5'@LB@ | |@LB@ 22 8@LB@@LB@@LB@Energy -8.21 kcal/mol@LB@Hybridization Energy -12.9357 kcal/mol@LB@Unfolding Energy - mRNA 3.48482 kcal/mol@LB@Unfolding Energy - sRNA 1.23627 kcal/mol@LB@@LB@Position - mRNA 191 -- 205@LB@Position - sRNA 9 -- 21@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 14 -- 20@LB@ |
126 |
0.01241 |
0.3104 |
b4379 |
yjjW |
-11.82 |
0.058804 |
207 -- 217 |
8 -- 18 |
putative pyruvate formate lyase activating enzyme |
|
_____________206_________218\n_____________|___________|\n5'-CGG...UGAAC___________UUUAG...UGC-3'\n______________AGCAGAUGCGC\n______________|:||:||||||\n______________UUGUUUACGCG\n3'-UUU...UACUA___________CAGAAAG-5'\n_____________|___________|\n_____________19__________7\n |
211 -- 217 |
8 -- 14 |
-16.9543 kcal/mol |
3.92931 kcal/mol |
1.20363 kcal/mol |
206 218@LB@ | |@LB@5'-CGG...UGAAC UUUAG...UGC-3'@LB@ AGCAGAUGCGC@LB@ |:||:||||||@LB@ UUGUUUACGCG@LB@3'-UUU...UACUA CAGAAAG-5'@LB@ | |@LB@ 19 7@LB@@LB@@LB@Energy -11.82 kcal/mol@LB@Hybridization Energy -16.9543 kcal/mol@LB@Unfolding Energy - mRNA 3.92931 kcal/mol@LB@Unfolding Energy - sRNA 1.20363 kcal/mol@LB@@LB@Position - mRNA 207 -- 217@LB@Position - sRNA 8 -- 18@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 8 -- 14@LB@ |
127 |
0.01249 |
0.3104 |
b2964 |
nupG |
-12.57 |
0.043346 |
150 -- 164 |
1 -- 16 |
nucleoside transporter |
b2406 |
_____________149______________165\n_____________|________________|\n5'-UCC...ACGGU________________AAACA...UGA-3'\n______________CAAAUGUGC_UUUUUC\n______________||||||:||_|:||||\n______________GUUUACGCG_AGAAAG\n3'-UUU...CUAUU_________C______-5'\n_____________|_______________|\n_____________17______________1\n |
152 -- 158 |
8 -- 14 |
-16.6758 kcal/mol |
2.8679 kcal/mol |
1.23857 kcal/mol |
149 165@LB@ | |@LB@5'-UCC...ACGGU AAACA...UGA-3'@LB@ CAAAUGUGC UUUUUC@LB@ ||||||:|| |:||||@LB@ GUUUACGCG AGAAAG@LB@3'-UUU...CUAUU C -5'@LB@ | |@LB@ 17 1@LB@@LB@@LB@Energy -12.57 kcal/mol@LB@Hybridization Energy -16.6758 kcal/mol@LB@Unfolding Energy - mRNA 2.8679 kcal/mol@LB@Unfolding Energy - sRNA 1.23857 kcal/mol@LB@@LB@Position - mRNA 150 -- 164@LB@Position - sRNA 1 -- 16@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 8 -- 14@LB@ |
128 |
0.01258 |
0.3104 |
b0677 |
nagA |
-7.18 |
0.336330 |
272 -- 297 |
1 -- 22 |
N-acetylglucosamine-6-phosphate deacetylase |
|
_____________271________________________298\n_____________|__________________________|\n5'-AAC...AUCGC_______CU___UAAAA______G__CGG-3'\n______________UGAUGGC__GAU_____GCGUCU_UC\n______________||||::|__:||_____||||||_||\n______________ACUAUUG__UUA_____CGCAGA_AG\n3'-UUU...CUACU_______U____CG_________A__-5'\n_____________|_________________________|\n_____________23________________________1\n |
272 -- 278 |
16 -- 22 |
-15.3811 kcal/mol |
6.93964 kcal/mol |
1.25963 kcal/mol |
271 298@LB@ | |@LB@5'-AAC...AUCGC CU UAAAA G CGG-3'@LB@ UGAUGGC GAU GCGUCU UC@LB@ ||||::| :|| |||||| ||@LB@ ACUAUUG UUA CGCAGA AG@LB@3'-UUU...CUACU U CG A -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -7.18 kcal/mol@LB@Hybridization Energy -15.3811 kcal/mol@LB@Unfolding Energy - mRNA 6.93964 kcal/mol@LB@Unfolding Energy - sRNA 1.25963 kcal/mol@LB@@LB@Position - mRNA 272 -- 297@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 272 -- 278@LB@Position Seed - sRNA 16 -- 22@LB@ |
129 |
0.01261 |
0.3104 |
b3025 |
qseB |
-10.92 |
0.084347 |
141 -- 152 |
5 -- 17 |
quorum sensing DNA-binding response regulator in two-component regulatory system with QseC |
|
_____________140___________153\n_____________|_____________|\n5'-GUG...GCUGU_____________ACAAC...GUC-3'\n______________ACAGA_GCGCGUU\n______________|||:|_||||||:\n______________UGUUU_CGCGCAG\n3'-UUU...ACUAU_____A_______AAAG-5'\n_____________|_____________|\n_____________18____________4\n |
146 -- 152 |
5 -- 11 |
-15.7823 kcal/mol |
3.63703 kcal/mol |
1.22241 kcal/mol |
140 153@LB@ | |@LB@5'-GUG...GCUGU ACAAC...GUC-3'@LB@ ACAGA GCGCGUU@LB@ |||:| ||||||:@LB@ UGUUU CGCGCAG@LB@3'-UUU...ACUAU A AAAG-5'@LB@ | |@LB@ 18 4@LB@@LB@@LB@Energy -10.92 kcal/mol@LB@Hybridization Energy -15.7823 kcal/mol@LB@Unfolding Energy - mRNA 3.63703 kcal/mol@LB@Unfolding Energy - sRNA 1.22241 kcal/mol@LB@@LB@Position - mRNA 141 -- 152@LB@Position - sRNA 5 -- 17@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 5 -- 11@LB@ |
130 |
0.01263 |
0.3104 |
b1952 |
dsrB |
-7.17 |
0.338083 |
230 -- 240 |
7 -- 18 |
uncharacterized protein |
|
_____________229__________241\n_____________|____________|\n5'-CGU...GUCAA____________GUCCG...ACC-3'\n______________AACGGAUG_GCG\n______________|||::|||_|||\n______________UUGUUUAC_CGC\n3'-UUU...UACUA________G___AGAAAG-5'\n_____________|____________|\n_____________19___________6\n |
231 -- 237 |
11 -- 17 |
-11.9456 kcal/mol |
3.57064 kcal/mol |
1.20891 kcal/mol |
229 241@LB@ | |@LB@5'-CGU...GUCAA GUCCG...ACC-3'@LB@ AACGGAUG GCG@LB@ |||::||| |||@LB@ UUGUUUAC CGC@LB@3'-UUU...UACUA G AGAAAG-5'@LB@ | |@LB@ 19 6@LB@@LB@@LB@Energy -7.17 kcal/mol@LB@Hybridization Energy -11.9456 kcal/mol@LB@Unfolding Energy - mRNA 3.57064 kcal/mol@LB@Unfolding Energy - sRNA 1.20891 kcal/mol@LB@@LB@Position - mRNA 230 -- 240@LB@Position - sRNA 7 -- 18@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 11 -- 17@LB@ |