177 |
0.01048 |
0.208 |
b2416 |
ptsI |
-10.21 |
0.127224 |
180 -- 212 |
6 -- 36 |
PEP-protein phosphotransferase of PTS system (enzyme I) |
|
_____________179________________________________213\n_____________|__________________________________|\n5'-GUG...AAAUC___C_____UAA____G___UA__A_________AUUUU...CCG-3'\n______________AGU_ACAAG___GGUA_GGU__UG__UUUCAGGC\n______________|||_|||||___||:|_:|:__||__||||||||\n______________UCA_UGUUC___CCGU_UCG__AC__AAAGUCCG\n3'-UUU...ACUAC___A____________G___UG__AA________GCGUG-5'\n_____________|__________________________________|\n_____________37_________________________________5\n |
206 -- 212 |
6 -- 12 |
-27.3223 kcal/mol |
5.11839 kcal/mol |
11.9979 kcal/mol |
179 213@LB@ | |@LB@5'-GUG...AAAUC C UAA G UA A AUUUU...CCG-3'@LB@ AGU ACAAG GGUA GGU UG UUUCAGGC@LB@ ||| ||||| ||:| :|: || ||||||||@LB@ UCA UGUUC CCGU UCG AC AAAGUCCG@LB@3'-UUU...ACUAC A G UG AA GCGUG-5'@LB@ | |@LB@ 37 5@LB@@LB@@LB@Energy -10.21 kcal/mol@LB@Hybridization Energy -27.3223 kcal/mol@LB@Unfolding Energy - mRNA 5.11839 kcal/mol@LB@Unfolding Energy - sRNA 11.9979 kcal/mol@LB@@LB@Position - mRNA 180 -- 212@LB@Position - sRNA 6 -- 36@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 6 -- 12@LB@ |
11 |
0.0004411 |
0.1198 |
b3154 |
yhbP |
-10.16 |
0.129625 |
138 -- 186 |
18 -- 75 |
UPF0306 family protein |
|
_____________137_________________________________________________________187\n_____________|___________________________________________________________|\n5'-AAA...AAGAA_______U____AUC_U________CAU______________GU_____CC________AAAAG...UUU-3'\n______________ACCAGGG__GUC___G_CUGCGUCG___GUUA________AG___CAGG__CACAGUAU\n______________|||||||__:||___|_|||||:||___:|||________||___||:|__|||||:|:\n______________UGGUCCC__UAG___C_GACGCGGC___UAAU________UC___GUUC__GUGUCGUG\n3'-UUU...GGUUG_______UU___AAC__________AUU____AAUACUAC__AAU____CC________ACAAA...GUG-5'\n_____________|___________________________________________________________|\n_____________76__________________________________________________________17\n |
155 -- 161 |
52 -- 58 |
-41.8924 kcal/mol |
11.5669 kcal/mol |
20.1571 kcal/mol |
137 187@LB@ | |@LB@5'-AAA...AAGAA U AUC U CAU GU CC AAAAG...UUU-3'@LB@ ACCAGGG GUC G CUGCGUCG GUUA AG CAGG CACAGUAU@LB@ ||||||| :|| | |||||:|| :||| || ||:| |||||:|:@LB@ UGGUCCC UAG C GACGCGGC UAAU UC GUUC GUGUCGUG@LB@3'-UUU...GGUUG UU AAC AUU AAUACUAC AAU CC ACAAA...GUG-5'@LB@ | |@LB@ 76 17@LB@@LB@@LB@Energy -10.16 kcal/mol@LB@Hybridization Energy -41.8924 kcal/mol@LB@Unfolding Energy - mRNA 11.5669 kcal/mol@LB@Unfolding Energy - sRNA 20.1571 kcal/mol@LB@@LB@Position - mRNA 138 -- 186@LB@Position - sRNA 18 -- 75@LB@Position Seed - mRNA 155 -- 161@LB@Position Seed - sRNA 52 -- 58@LB@ |
123 |
0.00672 |
0.1913 |
b0882 |
clpA |
-10.14 |
0.130927 |
50 -- 58 |
66 -- 74 |
ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease chaperone activity |
|
_____________49________59\n_____________|_________|\n5'-UUU...CACUA_________GGCCA...CGC-3'\n______________CCAGGGGAA\n______________||||||:||\n______________GGUCCCUUU\n3'-UUU...GUUGU_________AGAAC...GUG-5'\n_____________|_________|\n_____________75________65\n |
52 -- 58 |
66 -- 72 |
-13.8898 kcal/mol |
0.70189 kcal/mol |
3.04768 kcal/mol |
49 59@LB@ | |@LB@5'-UUU...CACUA GGCCA...CGC-3'@LB@ CCAGGGGAA@LB@ ||||||:||@LB@ GGUCCCUUU@LB@3'-UUU...GUUGU AGAAC...GUG-5'@LB@ | |@LB@ 75 65@LB@@LB@@LB@Energy -10.14 kcal/mol@LB@Hybridization Energy -13.8898 kcal/mol@LB@Unfolding Energy - mRNA 0.70189 kcal/mol@LB@Unfolding Energy - sRNA 3.04768 kcal/mol@LB@@LB@Position - mRNA 50 -- 58@LB@Position - sRNA 66 -- 74@LB@Position Seed - mRNA 52 -- 58@LB@Position Seed - sRNA 66 -- 72@LB@ |
144 |
0.008344 |
0.2033 |
b3159 |
yhbV |
-10.12 |
0.132236 |
144 -- 228 |
15 -- 82 |
U32 peptidase family protein |
|
_____________143______________________________________________________________________________________229\n_____________|________________________________________________________________________________________|\n5'-GUG...AUGUC__AA_____G__AACCAC__________AUAUCA________GGCA_______AAA___AUGAAAUAUUCCUU_______________GGUAC...AUC-3'\n______________CG__GGCAC_CA______UCUUGGC_GC______CCGUAAAU____GUGA_GA___GCA______________AGGGC_CAGUGCUGU\n______________||__::|||_||______|||||||_||______||||||||____:|||_||___:||______________|||||_|||::||||\n______________GC__UUGUG_GU______AGAACCG_CG______GGCAUUUA____UACU_CU___UGU______________UCCCG_GUCGUGACA\n3'-UUU...AUGAC__GG________CCCUUU_______A__C_____________AUAA____A__CAA______________________U_________AAAAG...GUG-5'\n_____________|________________________________________________________________________________________|\n_____________83_______________________________________________________________________________________14\n |
177 -- 183 |
48 -- 54 |
-52.1529 kcal/mol |
19.8598 kcal/mol |
22.1763 kcal/mol |
143 229@LB@ | |@LB@5'-GUG...AUGUC AA G AACCAC AUAUCA GGCA AAA AUGAAAUAUUCCUU GGUAC...AUC-3'@LB@ CG GGCAC CA UCUUGGC GC CCGUAAAU GUGA GA GCA AGGGC CAGUGCUGU@LB@ || ::||| || ||||||| || |||||||| :||| || :|| ||||| |||::||||@LB@ GC UUGUG GU AGAACCG CG GGCAUUUA UACU CU UGU UCCCG GUCGUGACA@LB@3'-UUU...AUGAC GG CCCUUU A C AUAA A CAA U AAAAG...GUG-5'@LB@ | |@LB@ 83 14@LB@@LB@@LB@Energy -10.12 kcal/mol@LB@Hybridization Energy -52.1529 kcal/mol@LB@Unfolding Energy - mRNA 19.8598 kcal/mol@LB@Unfolding Energy - sRNA 22.1763 kcal/mol@LB@@LB@Position - mRNA 144 -- 228@LB@Position - sRNA 15 -- 82@LB@Position Seed - mRNA 177 -- 183@LB@Position Seed - sRNA 48 -- 54@LB@ |
82 |
0.004565 |
0.1855 |
b4144 |
yjeI |
-10.12 |
0.132253 |
163 -- 240 |
1 -- 93 |
DUF4156 family lipoprotein |
|
_____________162_____________________________________________________________________________________________________241\n_____________|_______________________________________________________________________________________________________|\n5'-GCA...GACGA_____________U_________UUGAUUAU_______AACA_____A_______A________________UUA____G_______________U_______UACUG...GCA-3'\n______________CGCGAGUG__GCG_CCAGC_UCA________GGGGAAU______UGC__CGUAAA______________UAC____GCA_GG_AUUG____UCGG_GCCGCGC\n______________|||||:|:__|||_|||:|_:||________|||:|||______|||__||||||______________|||____|||_:|_|:||____||:|_|||||:|\n______________GCGCUUAU__CGC_GGUUG_GGU________CCCUUUA______ACG__GCAUUU______________AUG____CGU_UC_UGAC____AGUC_CGGCGUG\n3'-UUU...CCCAC________GA_________U__________________GAACCG___CG______AAUAAUACUACUCA___UUCC___G__G____AAAA____________-5'\n_____________|______________________________________________________________________________________________________|\n_____________94_____________________________________________________________________________________________________1\n |
234 -- 240 |
1 -- 7 |
-61.0049 kcal/mol |
21.8834 kcal/mol |
29.0051 kcal/mol |
162 241@LB@ | |@LB@5'-GCA...GACGA U UUGAUUAU AACA A A UUA G U UACUG...GCA-3'@LB@ CGCGAGUG GCG CCAGC UCA GGGGAAU UGC CGUAAA UAC GCA GG AUUG UCGG GCCGCGC@LB@ |||||:|: ||| |||:| :|| |||:||| ||| |||||| ||| ||| :| |:|| ||:| |||||:|@LB@ GCGCUUAU CGC GGUUG GGU CCCUUUA ACG GCAUUU AUG CGU UC UGAC AGUC CGGCGUG@LB@3'-UUU...CCCAC GA U GAACCG CG AAUAAUACUACUCA UUCC G G AAAA -5'@LB@ | |@LB@ 94 1@LB@@LB@@LB@Energy -10.12 kcal/mol@LB@Hybridization Energy -61.0049 kcal/mol@LB@Unfolding Energy - mRNA 21.8834 kcal/mol@LB@Unfolding Energy - sRNA 29.0051 kcal/mol@LB@@LB@Position - mRNA 163 -- 240@LB@Position - sRNA 1 -- 93@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 1 -- 7@LB@ |
193 |
0.01192 |
0.2159 |
b2453 |
eutG |
-10.04 |
0.136932 |
27 -- 40 |
17 -- 30 |
ethanol dehydrogenase involved in ethanolamine utilization; aldehyde reductase |
|
_____________26_____________41\n_____________|______________|\n5'-GGC...UAUUG_______G______ACUGA...GUC-3'\n______________AAGGGCA_GGCAUU\n______________|||||||_:|||:|\n______________UUCCCGU_UCGUGA\n3'-UUU...CAAUG_______G______CAAAA...GUG-5'\n_____________|______________|\n_____________31_____________16\n |
27 -- 33 |
24 -- 30 |
-21.9245 kcal/mol |
3.17394 kcal/mol |
8.71417 kcal/mol |
26 41@LB@ | |@LB@5'-GGC...UAUUG G ACUGA...GUC-3'@LB@ AAGGGCA GGCAUU@LB@ ||||||| :|||:|@LB@ UUCCCGU UCGUGA@LB@3'-UUU...CAAUG G CAAAA...GUG-5'@LB@ | |@LB@ 31 16@LB@@LB@@LB@Energy -10.04 kcal/mol@LB@Hybridization Energy -21.9245 kcal/mol@LB@Unfolding Energy - mRNA 3.17394 kcal/mol@LB@Unfolding Energy - sRNA 8.71417 kcal/mol@LB@@LB@Position - mRNA 27 -- 40@LB@Position - sRNA 17 -- 30@LB@Position Seed - mRNA 27 -- 33@LB@Position Seed - sRNA 24 -- 30@LB@ |
194 |
0.01194 |
0.2159 |
b3454 |
livF |
-10.01 |
0.138607 |
25 -- 47 |
72 -- 86 |
branched-chain amino acid ABC transporter ATPase |
|
_____________24______________________48\n_____________|_______________________|\n5'-AGA...GCCGA_______AAUCAUCA________CUAUC...UUG-3'\n______________ACUGCGC________CAACACCA\n______________|||||||________||||||||\n______________UGACGCG________GUUGUGGU\n3'-UUU...GCUUA_______________________CCCUU...GUG-5'\n_____________|_______________________|\n_____________87______________________71\n |
41 -- 47 |
72 -- 78 |
-22.1496 kcal/mol |
4.90616 kcal/mol |
7.23529 kcal/mol |
24 48@LB@ | |@LB@5'-AGA...GCCGA AAUCAUCA CUAUC...UUG-3'@LB@ ACUGCGC CAACACCA@LB@ ||||||| ||||||||@LB@ UGACGCG GUUGUGGU@LB@3'-UUU...GCUUA CCCUU...GUG-5'@LB@ | |@LB@ 87 71@LB@@LB@@LB@Energy -10.01 kcal/mol@LB@Hybridization Energy -22.1496 kcal/mol@LB@Unfolding Energy - mRNA 4.90616 kcal/mol@LB@Unfolding Energy - sRNA 7.23529 kcal/mol@LB@@LB@Position - mRNA 25 -- 47@LB@Position - sRNA 72 -- 86@LB@Position Seed - mRNA 41 -- 47@LB@Position Seed - sRNA 72 -- 78@LB@ |
172 |
0.0102 |
0.2071 |
b1383 |
ydbL |
-9.96 |
0.141752 |
21 -- 31 |
52 -- 62 |
DUF1318 family protein |
|
_____________20__________32\n_____________|___________|\n5'-AAA...UUUAC___________ACGUC...UAG-3'\n______________UGGCUGCGUUG\n______________||||||||::|\n______________ACCGACGCGGC\n3'-UUU...UUAGA___________AUUUA...GUG-5'\n_____________|___________|\n_____________63__________51\n |
25 -- 31 |
52 -- 58 |
-19.6889 kcal/mol |
4.85225 kcal/mol |
4.8804 kcal/mol |
20 32@LB@ | |@LB@5'-AAA...UUUAC ACGUC...UAG-3'@LB@ UGGCUGCGUUG@LB@ ||||||||::|@LB@ ACCGACGCGGC@LB@3'-UUU...UUAGA AUUUA...GUG-5'@LB@ | |@LB@ 63 51@LB@@LB@@LB@Energy -9.96 kcal/mol@LB@Hybridization Energy -19.6889 kcal/mol@LB@Unfolding Energy - mRNA 4.85225 kcal/mol@LB@Unfolding Energy - sRNA 4.8804 kcal/mol@LB@@LB@Position - mRNA 21 -- 31@LB@Position - sRNA 52 -- 62@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 52 -- 58@LB@ |
199 |
0.0124 |
0.2193 |
b0128 |
yadH |
-9.95 |
0.142385 |
61 -- 79 |
68 -- 88 |
putative ABC transporter permease |
|
_____________60____________________80\n_____________|_____________________|\n5'-UUA...UUGAA_________G___________UCAAC...UCA-3'\n______________GUGCUGCGU_AGCA__GGGGA\n______________:|:|||||:_|:||__:||||\n______________UAUGACGCG_UUGU__UCCCU\n3'-UUU...GCGCU_________G____GG_____UUAGA...GUG-5'\n_____________|_____________________|\n_____________89____________________67\n |
61 -- 67 |
82 -- 88 |
-26.4707 kcal/mol |
9.14335 kcal/mol |
7.38144 kcal/mol |
60 80@LB@ | |@LB@5'-UUA...UUGAA G UCAAC...UCA-3'@LB@ GUGCUGCGU AGCA GGGGA@LB@ :|:|||||: |:|| :||||@LB@ UAUGACGCG UUGU UCCCU@LB@3'-UUU...GCGCU G GG UUAGA...GUG-5'@LB@ | |@LB@ 89 67@LB@@LB@@LB@Energy -9.95 kcal/mol@LB@Hybridization Energy -26.4707 kcal/mol@LB@Unfolding Energy - mRNA 9.14335 kcal/mol@LB@Unfolding Energy - sRNA 7.38144 kcal/mol@LB@@LB@Position - mRNA 61 -- 79@LB@Position - sRNA 68 -- 88@LB@Position Seed - mRNA 61 -- 67@LB@Position Seed - sRNA 82 -- 88@LB@ |
27 |
0.001577 |
0.1727 |
b1679 |
sufE |
-9.94 |
0.142549 |
247 -- 262 |
68 -- 86 |
sulfur acceptor protein |
|
_____________246_________________263\n_____________|___________________|\n5'-AUG...UUUAC___________U_______AGAGA...GUC-3'\n______________GCUGCGCCAAC____GGGA\n______________:||||||||||____||||\n______________UGACGCGGUUG____CCCU\n3'-UUU...GCUUA___________UGGU____UUAGA...GUG-5'\n_____________|___________________|\n_____________87__________________67\n |
251 -- 257 |
76 -- 82 |
-25.4399 kcal/mol |
8.12138 kcal/mol |
7.37523 kcal/mol |
246 263@LB@ | |@LB@5'-AUG...UUUAC U AGAGA...GUC-3'@LB@ GCUGCGCCAAC GGGA@LB@ :|||||||||| ||||@LB@ UGACGCGGUUG CCCU@LB@3'-UUU...GCUUA UGGU UUAGA...GUG-5'@LB@ | |@LB@ 87 67@LB@@LB@@LB@Energy -9.94 kcal/mol@LB@Hybridization Energy -25.4399 kcal/mol@LB@Unfolding Energy - mRNA 8.12138 kcal/mol@LB@Unfolding Energy - sRNA 7.37523 kcal/mol@LB@@LB@Position - mRNA 247 -- 262@LB@Position - sRNA 68 -- 86@LB@Position Seed - mRNA 251 -- 257@LB@Position Seed - sRNA 76 -- 82@LB@ |