176 |
0.01044 |
0.208 |
b0933 |
ssuB |
-9.69 |
0.158756 |
203 -- 226 |
69 -- 90 |
aliphatic sulfonate ABC transporter ATPase |
|
_____________202______________________227\n_____________|________________________|\n5'-AUU...GGUAU_________UC___UGA_______CACGC...AUA-3'\n______________GAAUACUGC__GUC___ACCAGGG\n______________|||||||||__|:|___|||||||\n______________CUUAUGACG__CGG___UGGUCCC\n3'-UUU...ACGCG______________UUG_______UUUAG...GUG-5'\n_____________|________________________|\n_____________91_______________________68\n |
220 -- 226 |
69 -- 75 |
-28.101 kcal/mol |
8.24441 kcal/mol |
10.1628 kcal/mol |
202 227@LB@ | |@LB@5'-AUU...GGUAU UC UGA CACGC...AUA-3'@LB@ GAAUACUGC GUC ACCAGGG@LB@ ||||||||| |:| |||||||@LB@ CUUAUGACG CGG UGGUCCC@LB@3'-UUU...ACGCG UUG UUUAG...GUG-5'@LB@ | |@LB@ 91 68@LB@@LB@@LB@Energy -9.69 kcal/mol@LB@Hybridization Energy -28.101 kcal/mol@LB@Unfolding Energy - mRNA 8.24441 kcal/mol@LB@Unfolding Energy - sRNA 10.1628 kcal/mol@LB@@LB@Position - mRNA 203 -- 226@LB@Position - sRNA 69 -- 90@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 69 -- 75@LB@ |
161 |
0.009429 |
0.2062 |
b1372 |
stfR |
-7.17 |
0.431291 |
283 -- 297 |
69 -- 83 |
Rac prophage; putative tail fiber protein |
b1547 |
_____________282_____________298\n_____________|_______________|\n5'-CAC...AAAAC__AA________C__UGG-3'\n______________GU__CAGCACCA_GG\n______________|:__||:|||||_||\n______________CG__GUUGUGGU_CC\n3'-UUU...UAUGA__CG________C__UUUAG...GUG-5'\n_____________|_______________|\n_____________84______________68\n |
288 -- 294 |
72 -- 78 |
-17.3245 kcal/mol |
2.81769 kcal/mol |
7.33837 kcal/mol |
282 298@LB@ | |@LB@5'-CAC...AAAAC AA C UGG-3'@LB@ GU CAGCACCA GG@LB@ |: ||:||||| ||@LB@ CG GUUGUGGU CC@LB@3'-UUU...UAUGA CG C UUUAG...GUG-5'@LB@ | |@LB@ 84 68@LB@@LB@@LB@Energy -7.17 kcal/mol@LB@Hybridization Energy -17.3245 kcal/mol@LB@Unfolding Energy - mRNA 2.81769 kcal/mol@LB@Unfolding Energy - sRNA 7.33837 kcal/mol@LB@@LB@Position - mRNA 283 -- 297@LB@Position - sRNA 69 -- 83@LB@Position Seed - mRNA 288 -- 294@LB@Position Seed - sRNA 72 -- 78@LB@ |
168 |
0.009959 |
0.2071 |
b0727 |
sucB |
-11.51 |
0.071542 |
30 -- 47 |
72 -- 88 |
dihydrolipoyltranssuccinase |
|
_____________29_________________48\n_____________|__________________|\n5'-CAG...GCAUG_______A__________UUUCC...GUG-3'\n______________GUACUGC_GCCAGCAUCA\n______________:||||||_||||:||:||\n______________UAUGACG_CGGUUGUGGU\n3'-UUU...GCGCU__________________CCCUU...GUG-5'\n_____________|__________________|\n_____________89_________________71\n |
38 -- 44 |
75 -- 81 |
-25.7274 kcal/mol |
6.97777 kcal/mol |
7.24148 kcal/mol |
29 48@LB@ | |@LB@5'-CAG...GCAUG A UUUCC...GUG-3'@LB@ GUACUGC GCCAGCAUCA@LB@ :|||||| ||||:||:||@LB@ UAUGACG CGGUUGUGGU@LB@3'-UUU...GCGCU CCCUU...GUG-5'@LB@ | |@LB@ 89 71@LB@@LB@@LB@Energy -11.51 kcal/mol@LB@Hybridization Energy -25.7274 kcal/mol@LB@Unfolding Energy - mRNA 6.97777 kcal/mol@LB@Unfolding Energy - sRNA 7.24148 kcal/mol@LB@@LB@Position - mRNA 30 -- 47@LB@Position - sRNA 72 -- 88@LB@Position Seed - mRNA 38 -- 44@LB@Position Seed - sRNA 75 -- 81@LB@ |
181 |
0.0108 |
0.2089 |
b1683 |
sufB |
-11.33 |
0.077347 |
153 -- 175 |
52 -- 74 |
component of SufBCD Fe-S cluster assembly scaffold |
|
_____________152_______________________176\n_____________|_________________________|\n5'-GUU...AAAGC____AAU___UG__________G__AAAGC...AGC-3'\n______________CCAG___GAA____UGGCUGUG_CG\n______________||||___|||____||||||:|_||\n______________GGUC___CUU____ACCGACGC_GC\n3'-UUU...GUUGU____C_____UAGA________G__AUUUA...GUG-5'\n_____________|_________________________|\n_____________75________________________51\n |
166 -- 172 |
55 -- 61 |
-23.8546 kcal/mol |
3.76094 kcal/mol |
8.7601 kcal/mol |
152 176@LB@ | |@LB@5'-GUU...AAAGC AAU UG G AAAGC...AGC-3'@LB@ CCAG GAA UGGCUGUG CG@LB@ |||| ||| ||||||:| ||@LB@ GGUC CUU ACCGACGC GC@LB@3'-UUU...GUUGU C UAGA G AUUUA...GUG-5'@LB@ | |@LB@ 75 51@LB@@LB@@LB@Energy -11.33 kcal/mol@LB@Hybridization Energy -23.8546 kcal/mol@LB@Unfolding Energy - mRNA 3.76094 kcal/mol@LB@Unfolding Energy - sRNA 8.7601 kcal/mol@LB@@LB@Position - mRNA 153 -- 175@LB@Position - sRNA 52 -- 74@LB@Position Seed - mRNA 166 -- 172@LB@Position Seed - sRNA 55 -- 61@LB@ |
27 |
0.001577 |
0.1727 |
b1679 |
sufE |
-9.94 |
0.142549 |
247 -- 262 |
68 -- 86 |
sulfur acceptor protein |
|
_____________246_________________263\n_____________|___________________|\n5'-AUG...UUUAC___________U_______AGAGA...GUC-3'\n______________GCUGCGCCAAC____GGGA\n______________:||||||||||____||||\n______________UGACGCGGUUG____CCCU\n3'-UUU...GCUUA___________UGGU____UUAGA...GUG-5'\n_____________|___________________|\n_____________87__________________67\n |
251 -- 257 |
76 -- 82 |
-25.4399 kcal/mol |
8.12138 kcal/mol |
7.37523 kcal/mol |
246 263@LB@ | |@LB@5'-AUG...UUUAC U AGAGA...GUC-3'@LB@ GCUGCGCCAAC GGGA@LB@ :|||||||||| ||||@LB@ UGACGCGGUUG CCCU@LB@3'-UUU...GCUUA UGGU UUAGA...GUG-5'@LB@ | |@LB@ 87 67@LB@@LB@@LB@Energy -9.94 kcal/mol@LB@Hybridization Energy -25.4399 kcal/mol@LB@Unfolding Energy - mRNA 8.12138 kcal/mol@LB@Unfolding Energy - sRNA 7.37523 kcal/mol@LB@@LB@Position - mRNA 247 -- 262@LB@Position - sRNA 68 -- 86@LB@Position Seed - mRNA 251 -- 257@LB@Position Seed - sRNA 76 -- 82@LB@ |
124 |
0.006738 |
0.1913 |
b2533 |
suhB |
-10.44 |
0.114821 |
158 -- 166 |
51 -- 59 |
inositol monophosphatase |
|
_____________157_______167\n_____________|_________|\n5'-UUG...AUACU_________UUUCC...AGA-3'\n______________CUGCGCCGU\n______________|||||||||\n______________GACGCGGCA\n3'-UUU...GAACC_________UUUAA...GUG-5'\n_____________|_________|\n_____________60________50\n |
160 -- 166 |
51 -- 57 |
-17.2912 kcal/mol |
2.02049 kcal/mol |
4.83013 kcal/mol |
157 167@LB@ | |@LB@5'-UUG...AUACU UUUCC...AGA-3'@LB@ CUGCGCCGU@LB@ |||||||||@LB@ GACGCGGCA@LB@3'-UUU...GAACC UUUAA...GUG-5'@LB@ | |@LB@ 60 50@LB@@LB@@LB@Energy -10.44 kcal/mol@LB@Hybridization Energy -17.2912 kcal/mol@LB@Unfolding Energy - mRNA 2.02049 kcal/mol@LB@Unfolding Energy - sRNA 4.83013 kcal/mol@LB@@LB@Position - mRNA 158 -- 166@LB@Position - sRNA 51 -- 59@LB@Position Seed - mRNA 160 -- 166@LB@Position Seed - sRNA 51 -- 57@LB@ |
79 |
0.004357 |
0.1855 |
b0008 |
talB |
-10.61 |
0.106795 |
240 -- 280 |
50 -- 88 |
transaldolase B |
|
_____________239________________________________________281\n_____________|__________________________________________|\n5'-AGG...CCACC___G_________________C___GC___AAUGAA______UCAAC...CAA-3'\n______________GUA_UG_GCCGACACUGGGGA_AUC__GGC______GCUGUA\n______________:||_||_|||:||||::||||_|||__|||______||:|||\n______________UAU_AC_CGGUUGUGGUCCCU_UAG__CCG______CGGCAU\n3'-UUU...GCGCU___G__G______________U___AA___ACG_________UUAAU...GUG-5'\n_____________|__________________________________________|\n_____________89_________________________________________49\n |
253 -- 259 |
68 -- 74 |
-44.9099 kcal/mol |
17.4497 kcal/mol |
16.8544 kcal/mol |
239 281@LB@ | |@LB@5'-AGG...CCACC G C GC AAUGAA UCAAC...CAA-3'@LB@ GUA UG GCCGACACUGGGGA AUC GGC GCUGUA@LB@ :|| || |||:||||::|||| ||| ||| ||:|||@LB@ UAU AC CGGUUGUGGUCCCU UAG CCG CGGCAU@LB@3'-UUU...GCGCU G G U AA ACG UUAAU...GUG-5'@LB@ | |@LB@ 89 49@LB@@LB@@LB@Energy -10.61 kcal/mol@LB@Hybridization Energy -44.9099 kcal/mol@LB@Unfolding Energy - mRNA 17.4497 kcal/mol@LB@Unfolding Energy - sRNA 16.8544 kcal/mol@LB@@LB@Position - mRNA 240 -- 280@LB@Position - sRNA 50 -- 88@LB@Position Seed - mRNA 253 -- 259@LB@Position Seed - sRNA 68 -- 74@LB@ |
191 |
0.01171 |
0.2159 |
b4221 |
tamB |
-9.06 |
0.207346 |
81 -- 101 |
52 -- 76 |
translocation and assembly module for autotransporter export inner membrane subunit |
|
_____________80_________________________102\n_____________|__________________________|\n5'-ACC...ACCGG__________________G_______GGAAU...AUC-3'\n______________UACCGGGG___UC__GGC_UGCGCUG\n______________:|||:|||___||__|||_|||||:|\n______________GUGGUCCC___AG__CCG_ACGCGGC\n3'-UUU...CGGUU________UUU__AA___________AUUUA...GUG-5'\n_____________|__________________________|\n_____________77_________________________51\n |
95 -- 101 |
52 -- 58 |
-29.4253 kcal/mol |
11.0996 kcal/mol |
9.26585 kcal/mol |
80 102@LB@ | |@LB@5'-ACC...ACCGG G GGAAU...AUC-3'@LB@ UACCGGGG UC GGC UGCGCUG@LB@ :|||:||| || ||| |||||:|@LB@ GUGGUCCC AG CCG ACGCGGC@LB@3'-UUU...CGGUU UUU AA AUUUA...GUG-5'@LB@ | |@LB@ 77 51@LB@@LB@@LB@Energy -9.06 kcal/mol@LB@Hybridization Energy -29.4253 kcal/mol@LB@Unfolding Energy - mRNA 11.0996 kcal/mol@LB@Unfolding Energy - sRNA 9.26585 kcal/mol@LB@@LB@Position - mRNA 81 -- 101@LB@Position - sRNA 52 -- 76@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 52 -- 58@LB@ |
167 |
0.009922 |
0.2071 |
b0367 |
tauC |
-5.98 |
0.628340 |
152 -- 162 |
85 -- 95 |
taurine ABC transporter permease |
|
_____________151_________163\n_____________|___________|\n5'-AUA...CGCCA___________GUUUU...UUU-3'\n______________UGCGCGAAUAU\n______________||||||||||:\n______________ACGCGCUUAUG\n3'-UUU...GCCCC___________ACGCG...GUG-5'\n_____________|___________|\n_____________96__________84\n |
154 -- 160 |
87 -- 93 |
-16.0697 kcal/mol |
4.17782 kcal/mol |
5.90856 kcal/mol |
151 163@LB@ | |@LB@5'-AUA...CGCCA GUUUU...UUU-3'@LB@ UGCGCGAAUAU@LB@ ||||||||||:@LB@ ACGCGCUUAUG@LB@3'-UUU...GCCCC ACGCG...GUG-5'@LB@ | |@LB@ 96 84@LB@@LB@@LB@Energy -5.98 kcal/mol@LB@Hybridization Energy -16.0697 kcal/mol@LB@Unfolding Energy - mRNA 4.17782 kcal/mol@LB@Unfolding Energy - sRNA 5.90856 kcal/mol@LB@@LB@Position - mRNA 152 -- 162@LB@Position - sRNA 85 -- 95@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 87 -- 93@LB@ |
145 |
0.008374 |
0.2033 |
b0068 |
thiB |
-7.61 |
0.367750 |
229 -- 244 |
73 -- 87 |
thiamine/thiamine pyrophosphate/thiamine monophosphate ABC transporter periplasmic binding protein |
|
_____________228______________245\n_____________|________________|\n5'-UUU...GCUGU________A_______CGUUU...ACU-3'\n______________UGCUGUGC_CAGCGCC\n______________|:|||:||_||:|:||\n______________AUGACGCG_GUUGUGG\n3'-UUU...CGCUU________________UCCCU...GUG-5'\n_____________|________________|\n_____________88_______________72\n |
230 -- 236 |
80 -- 86 |
-23.483 kcal/mol |
8.91653 kcal/mol |
6.95602 kcal/mol |
228 245@LB@ | |@LB@5'-UUU...GCUGU A CGUUU...ACU-3'@LB@ UGCUGUGC CAGCGCC@LB@ |:|||:|| ||:|:||@LB@ AUGACGCG GUUGUGG@LB@3'-UUU...CGCUU UCCCU...GUG-5'@LB@ | |@LB@ 88 72@LB@@LB@@LB@Energy -7.61 kcal/mol@LB@Hybridization Energy -23.483 kcal/mol@LB@Unfolding Energy - mRNA 8.91653 kcal/mol@LB@Unfolding Energy - sRNA 6.95602 kcal/mol@LB@@LB@Position - mRNA 229 -- 244@LB@Position - sRNA 73 -- 87@LB@Position Seed - mRNA 230 -- 236@LB@Position Seed - sRNA 80 -- 86@LB@ |