| 76 |
0.003538 |
0.1596 |
stm3058 |
pepP |
-14.75 |
0.129287 |
129 -- 167 |
36 -- 78 |
Xaa-Pro aminopeptidase |
|
_____________128_________________168\n_____________|___________________|\n5'-CGA...CUGGC___________CCG_____GCCGC...GCA-3'\n______________GCAAAUGCAGC___GCAGC\n______________|||||::||:|___:||:|\n______________CGUUUGUGUUG___UGUUG\n3'-UUU...GUUAA___________UUG_____UAGUG...UCA-5'\n_____________|___________________|\n_____________79__________________35\n |
249 -- 255 |
80 -- 86 |
-18.5262 kcal/mol |
6.77337 kcal/mol |
3.80362 kcal/mol |
128 168@LB@ | |@LB@5'-CGA...CUGGC CCG GCCGC...GCA-3'@LB@ GCAAAUGCAGC GCAGC@LB@ |||||::||:| :||:|@LB@ CGUUUGUGUUG UGUUG@LB@3'-UUU...GUUAA UUG UAGUG...UCA-5'@LB@ | |@LB@ 79 35@LB@@LB@@LB@Energy -14.75 kcal/mol@LB@Hybridization Energy -18.5262 kcal/mol@LB@Unfolding Energy - mRNA 6.77337 kcal/mol@LB@Unfolding Energy - sRNA 3.80362 kcal/mol@LB@@LB@Position - mRNA 129 -- 167@LB@Position - sRNA 36 -- 78@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 80 -- 86@LB@ |
| 66 |
0.003179 |
0.1596 |
stm0264 |
dnaQ |
-14.69 |
0.132400 |
209 -- 271 |
35 -- 91 |
DNA polymerase III epsilon subunit |
|
_____________208__________________________________________272\n_____________|____________________________________________|\n5'-CGG...CGCAA______C__AAAU_______AU_______U___AUU________GAUUG...UCG-3'\n______________GUCUGA_AU____GACCGAU___GAGCAC_GCA___ACACGACA\n______________||||||_||____||||:||___:|:|||_:||___||||:|||\n______________CAGACU_UA____CUGGUUA___UUUGUG_UGU___UGUGUUGU\n3'-UUU...GGCAC_________GCGU_______ACG______U______________AGUGU...UCA-5'\n_____________|____________________________________________|\n_____________92___________________________________________34\n |
217 -- 223 |
71 -- 77 |
-33.8618 kcal/mol |
8.04508 kcal/mol |
13.5573 kcal/mol |
208 272@LB@ | |@LB@5'-CGG...CGCAA C AAAU AU U AUU GAUUG...UCG-3'@LB@ GUCUGA AU GACCGAU GAGCAC GCA ACACGACA@LB@ |||||| || ||||:|| :|:||| :|| ||||:|||@LB@ CAGACU UA CUGGUUA UUUGUG UGU UGUGUUGU@LB@3'-UUU...GGCAC GCGU ACG U AGUGU...UCA-5'@LB@ | |@LB@ 92 34@LB@@LB@@LB@Energy -14.69 kcal/mol@LB@Hybridization Energy -33.8618 kcal/mol@LB@Unfolding Energy - mRNA 8.04508 kcal/mol@LB@Unfolding Energy - sRNA 13.5573 kcal/mol@LB@@LB@Position - mRNA 209 -- 271@LB@Position - sRNA 35 -- 91@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 173 |
0.009489 |
0.1945 |
stm3985 |
yigZ |
-14.68 |
0.132642 |
77 -- 135 |
33 -- 90 |
YigZ family protein |
|
_____________76___________________136\n_____________|____________________|\n5'-CGA...GUUCA________UU__________GAAAA...ACG-3'\n______________GCAAGCAC__CAAC_UGGCA\n______________||||:|||__||||_:::||\n______________CGUUUGUG__GUUG_GUUGU\n3'-UUU...GUUAA________UU____U_____AGUGU...UCA-5'\n_____________|____________________|\n_____________91___________________32\n |
78 -- 84 |
83 -- 89 |
-19.4869 kcal/mol |
6.86655 kcal/mol |
3.80671 kcal/mol |
76 136@LB@ | |@LB@5'-CGA...GUUCA UU GAAAA...ACG-3'@LB@ GCAAGCAC CAAC UGGCA@LB@ ||||:||| |||| :::||@LB@ CGUUUGUG GUUG GUUGU@LB@3'-UUU...GUUAA UU U AGUGU...UCA-5'@LB@ | |@LB@ 91 32@LB@@LB@@LB@Energy -14.68 kcal/mol@LB@Hybridization Energy -19.4869 kcal/mol@LB@Unfolding Energy - mRNA 6.86655 kcal/mol@LB@Unfolding Energy - sRNA 3.80671 kcal/mol@LB@@LB@Position - mRNA 77 -- 135@LB@Position - sRNA 33 -- 90@LB@Position Seed - mRNA 78 -- 84@LB@Position Seed - sRNA 83 -- 89@LB@ |
| 122 |
0.00604 |
0.1758 |
stm2353 |
hisQ |
-14.65 |
0.134227 |
190 -- 212 |
140 -- 163 |
amino acid ABC transporter permease |
|
_____________189______________________213\n_____________|________________________|\n5'-GAU...CAACA________UGCAUGU_________UUUUC...UCG-3'\n______________GGACAGGC________UGUACGGG\n______________||||||:|________|||||:||\n______________CCUGUCUG________ACAUGUCC\n3'-UUU...UGAUA________UCCCAUUU________UUCAC...UCA-5'\n_____________|________________________|\n_____________164______________________139\n |
206 -- 212 |
140 -- 146 |
-25.7393 kcal/mol |
6.65037 kcal/mol |
3.70771 kcal/mol |
189 213@LB@ | |@LB@5'-GAU...CAACA UGCAUGU UUUUC...UCG-3'@LB@ GGACAGGC UGUACGGG@LB@ ||||||:| |||||:||@LB@ CCUGUCUG ACAUGUCC@LB@3'-UUU...UGAUA UCCCAUUU UUCAC...UCA-5'@LB@ | |@LB@ 164 139@LB@@LB@@LB@Energy -14.65 kcal/mol@LB@Hybridization Energy -25.7393 kcal/mol@LB@Unfolding Energy - mRNA 6.65037 kcal/mol@LB@Unfolding Energy - sRNA 3.70771 kcal/mol@LB@@LB@Position - mRNA 190 -- 212@LB@Position - sRNA 140 -- 163@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 140 -- 146@LB@ |
| 143 |
0.007336 |
0.182 |
stm2276 |
ubiG |
-14.65 |
0.134291 |
225 -- 278 |
36 -- 81 |
2-octaprenyl-6-hydroxy phenol methylase |
|
_____________224_________________279\n_____________|___________________|\n5'-CAC...CGGCA____________CA_____UUUGC...AAU-3'\n______________GUAGAUAUAACG__GCGAC\n______________|:|:|:|:|||:__:|:||\n______________CGUUUGUGUUGU__UGUUG\n3'-UUU...GUUAA____________UG_____UAGUG...UCA-5'\n_____________|___________________|\n_____________82__________________35\n |
134 -- 140 |
80 -- 86 |
-18.0681 kcal/mol |
5.41873 kcal/mol |
3.80362 kcal/mol |
224 279@LB@ | |@LB@5'-CAC...CGGCA CA UUUGC...AAU-3'@LB@ GUAGAUAUAACG GCGAC@LB@ |:|:|:|:|||: :|:||@LB@ CGUUUGUGUUGU UGUUG@LB@3'-UUU...GUUAA UG UAGUG...UCA-5'@LB@ | |@LB@ 82 35@LB@@LB@@LB@Energy -14.65 kcal/mol@LB@Hybridization Energy -18.0681 kcal/mol@LB@Unfolding Energy - mRNA 5.41873 kcal/mol@LB@Unfolding Energy - sRNA 3.80362 kcal/mol@LB@@LB@Position - mRNA 225 -- 278@LB@Position - sRNA 36 -- 81@LB@Position Seed - mRNA 134 -- 140@LB@Position Seed - sRNA 80 -- 86@LB@ |
| 153 |
0.008123 |
0.1845 |
stm2512 |
xseA |
-14.57 |
0.138273 |
215 -- 252 |
42 -- 82 |
exodeoxyribonuclease VII large subunit |
|
_____________214________253\n_____________|__________|\n5'-CGU...UUUUU__________GCCUU...GCG-3'\n______________ACCGUAAGCC\n______________||||||||||\n______________UGGCAUUCGG\n3'-UUU...AGUGU__________UUUUC...UCA-5'\n_____________|__________|\n_____________83_________41\n |
234 -- 240 |
56 -- 62 |
-17.1871 kcal/mol |
1.1981 kcal/mol |
7.48121 kcal/mol |
214 253@LB@ | |@LB@5'-CGU...UUUUU GCCUU...GCG-3'@LB@ ACCGUAAGCC@LB@ ||||||||||@LB@ UGGCAUUCGG@LB@3'-UUU...AGUGU UUUUC...UCA-5'@LB@ | |@LB@ 83 41@LB@@LB@@LB@Energy -14.57 kcal/mol@LB@Hybridization Energy -17.1871 kcal/mol@LB@Unfolding Energy - mRNA 1.1981 kcal/mol@LB@Unfolding Energy - sRNA 7.48121 kcal/mol@LB@@LB@Position - mRNA 215 -- 252@LB@Position - sRNA 42 -- 82@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 56 -- 62@LB@ |
| 176 |
0.009613 |
0.1945 |
stm3378 |
N/A |
-14.56 |
0.138793 |
155 -- 243 |
45 -- 125 |
sulfoxide reductase heme-binding subunit YedZ |
|
_____________154_______________________________________________________________________________________244\n_____________|_________________________________________________________________________________________|\n5'-UGU...AAUGA____GCU_____GU____C_____CAAU_______AGAAUUU____G____U___________A____G_______U____________UUGUC...GUG-3'\n______________AGUC___UCGCU__AUCG_GGUCU____UUGCGGG_______UUAA_UGCG__C_UGACAGCA_AACA__AUAACC___GGCUAAAAGU\n______________||||___|||||__|:||_|||||____|:||:|:_______::||_|||:__|_::|||:||_||||__|:||||___:||:|||||:\n______________UCAG___AGCGA__UGGC_CCAGA____AGCGUCU_______GGUU_ACGU__G_GUUGUUGU_UUGU__UGUUGG___UCGGUUUUCG\n3'-UUU...UCCCA__________________A_____CUU___________________A____UU_U________G____AG______CAU__________GGUAG...UCA-5'\n_____________|_________________________________________________________________________________________|\n_____________126_______________________________________________________________________________________44\n |
209 -- 215 |
76 -- 82 |
-59.1156 kcal/mol |
19.0244 kcal/mol |
31.7466 kcal/mol |
154 244@LB@ | |@LB@5'-UGU...AAUGA GCU GU C CAAU AGAAUUU G U A G U UUGUC...GUG-3'@LB@ AGUC UCGCU AUCG GGUCU UUGCGGG UUAA UGCG C UGACAGCA AACA AUAACC GGCUAAAAGU@LB@ |||| ||||| |:|| ||||| |:||:|: ::|| |||: | ::|||:|| |||| |:|||| :||:|||||:@LB@ UCAG AGCGA UGGC CCAGA AGCGUCU GGUU ACGU G GUUGUUGU UUGU UGUUGG UCGGUUUUCG@LB@3'-UUU...UCCCA A CUU A UU U G AG CAU GGUAG...UCA-5'@LB@ | |@LB@ 126 44@LB@@LB@@LB@Energy -14.56 kcal/mol@LB@Hybridization Energy -59.1156 kcal/mol@LB@Unfolding Energy - mRNA 19.0244 kcal/mol@LB@Unfolding Energy - sRNA 31.7466 kcal/mol@LB@@LB@Position - mRNA 155 -- 243@LB@Position - sRNA 45 -- 125@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 76 -- 82@LB@ |
| 198 |
0.01098 |
0.197 |
stm2803 |
N/A |
-14.51 |
0.140962 |
192 -- 262 |
36 -- 101 |
DNA-binding transcriptional regulator |
|
_____________191___________________________263\n_____________|_____________________________|\n5'-GCU...AAAAA________UA___C_____UAU_______UCGCU...CGC-3'\n______________GCAGACCA__UGC__GCGC___CAGCACA\n______________||||||||__|||__:|:|___||:||||\n______________CGUCUGGU__ACG__UGUG___GUUGUGU\n3'-UUU...CUUAG________UA___UU____UU________UGUAG...UCA-5'\n_____________|_____________________________|\n_____________102___________________________35\n |
213 -- 219 |
74 -- 80 |
-31.0005 kcal/mol |
8.41541 kcal/mol |
13.1066 kcal/mol |
191 263@LB@ | |@LB@5'-GCU...AAAAA UA C UAU UCGCU...CGC-3'@LB@ GCAGACCA UGC GCGC CAGCACA@LB@ |||||||| ||| :|:| ||:||||@LB@ CGUCUGGU ACG UGUG GUUGUGU@LB@3'-UUU...CUUAG UA UU UU UGUAG...UCA-5'@LB@ | |@LB@ 102 35@LB@@LB@@LB@Energy -14.51 kcal/mol@LB@Hybridization Energy -31.0005 kcal/mol@LB@Unfolding Energy - mRNA 8.41541 kcal/mol@LB@Unfolding Energy - sRNA 13.1066 kcal/mol@LB@@LB@Position - mRNA 192 -- 262@LB@Position - sRNA 36 -- 101@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 74 -- 80@LB@ |
| 130 |
0.00652 |
0.1774 |
stm4228 |
malF |
-14.47 |
0.143021 |
162 -- 175 |
1 -- 15 |
maltose ABC transporter permease MalF |
|
_____________161_____________176\n_____________|_______________|\n5'-AAC...ACAUC_______________UUCAA...UAA-3'\n______________UCCGGC_CAGGAAGU\n______________||||||_||||||||\n______________AGGCCG_GUCCUUCA\n3'-UUU...AAGCA______A________-5'\n_____________|______________|\n_____________16_____________1\n |
169 -- 175 |
1 -- 7 |
-25.2779 kcal/mol |
6.67863 kcal/mol |
4.81264 kcal/mol |
161 176@LB@ | |@LB@5'-AAC...ACAUC UUCAA...UAA-3'@LB@ UCCGGC CAGGAAGU@LB@ |||||| ||||||||@LB@ AGGCCG GUCCUUCA@LB@3'-UUU...AAGCA A -5'@LB@ | |@LB@ 16 1@LB@@LB@@LB@Energy -14.47 kcal/mol@LB@Hybridization Energy -25.2779 kcal/mol@LB@Unfolding Energy - mRNA 6.67863 kcal/mol@LB@Unfolding Energy - sRNA 4.81264 kcal/mol@LB@@LB@Position - mRNA 162 -- 175@LB@Position - sRNA 1 -- 15@LB@Position Seed - mRNA 169 -- 175@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 158 |
0.00827 |
0.1845 |
stm1712 |
acnA |
-14.47 |
0.143385 |
236 -- 294 |
48 -- 104 |
aconitate hydratase 1 |
|
_____________235_________________295\n_____________|___________________|\n5'-AUC...CAACC_______G_AU________CGCAA...GCG-3'\n______________CUGUGGA_A__CAGGGUAA\n______________||:||||_|__||||||||\n______________GAUACCU_U__GUCCCAUU\n3'-UUU...UUAGU_______G_CU________UACAU...UCA-5'\n_____________|___________________|\n_____________105_________________47\n |
167 -- 173 |
149 -- 155 |
-24.0869 kcal/mol |
10.3759 kcal/mol |
4.11594 kcal/mol |
235 295@LB@ | |@LB@5'-AUC...CAACC G AU CGCAA...GCG-3'@LB@ CUGUGGA A CAGGGUAA@LB@ ||:|||| | ||||||||@LB@ GAUACCU U GUCCCAUU@LB@3'-UUU...UUAGU G CU UACAU...UCA-5'@LB@ | |@LB@ 105 47@LB@@LB@@LB@Energy -14.47 kcal/mol@LB@Hybridization Energy -24.0869 kcal/mol@LB@Unfolding Energy - mRNA 10.3759 kcal/mol@LB@Unfolding Energy - sRNA 4.11594 kcal/mol@LB@@LB@Position - mRNA 236 -- 294@LB@Position - sRNA 48 -- 104@LB@Position Seed - mRNA 167 -- 173@LB@Position Seed - sRNA 149 -- 155@LB@ |
