| 55 |
0.002114 |
0.1363 |
stm0887 |
artJ |
-12.89 |
0.249853 |
160 -- 177 |
72 -- 90 |
arginine ABC transporter substrate-binding protein |
|
_____________159_________________178\n_____________|___________________|\n5'-AUG...AUGCC___________________CAUAA...CGU-3'\n______________GCAGACACGGC_GCAUAAU\n______________|||:||||::|_:||:||:\n______________CGUUUGUGUUG_UGUGUUG\n3'-UUU...GUUAA___________U_______UAGUG...UCA-5'\n_____________|___________________|\n_____________91__________________71\n |
171 -- 177 |
72 -- 78 |
-21.0424 kcal/mol |
4.03353 kcal/mol |
3.80362 kcal/mol |
159 178@LB@ | |@LB@5'-AUG...AUGCC CAUAA...CGU-3'@LB@ GCAGACACGGC GCAUAAU@LB@ |||:||||::| :||:||:@LB@ CGUUUGUGUUG UGUGUUG@LB@3'-UUU...GUUAA U UAGUG...UCA-5'@LB@ | |@LB@ 91 71@LB@@LB@@LB@Energy -12.89 kcal/mol@LB@Hybridization Energy -21.0424 kcal/mol@LB@Unfolding Energy - mRNA 4.03353 kcal/mol@LB@Unfolding Energy - sRNA 3.80362 kcal/mol@LB@@LB@Position - mRNA 160 -- 177@LB@Position - sRNA 72 -- 90@LB@Position Seed - mRNA 171 -- 177@LB@Position Seed - sRNA 72 -- 78@LB@ |
| 51 |
0.001912 |
0.1324 |
stm2692 |
N/A |
-10.31 |
0.546971 |
162 -- 173 |
130 -- 141 |
putative HlyD family secretion protein |
|
_____________161__________174\n_____________|____________|\n5'-GUU...CCGUC____________AUGAA...CGU-3'\n______________GGGAGUGGAAAA\n______________||:||||:||||\n______________CCUUCACUUUUU\n3'-UUU...CAUGU____________CCCAU...UCA-5'\n_____________|____________|\n_____________142__________129\n |
166 -- 172 |
131 -- 137 |
-15.3652 kcal/mol |
2.02429 kcal/mol |
2.83702 kcal/mol |
161 174@LB@ | |@LB@5'-GUU...CCGUC AUGAA...CGU-3'@LB@ GGGAGUGGAAAA@LB@ ||:||||:||||@LB@ CCUUCACUUUUU@LB@3'-UUU...CAUGU CCCAU...UCA-5'@LB@ | |@LB@ 142 129@LB@@LB@@LB@Energy -10.31 kcal/mol@LB@Hybridization Energy -15.3652 kcal/mol@LB@Unfolding Energy - mRNA 2.02429 kcal/mol@LB@Unfolding Energy - sRNA 2.83702 kcal/mol@LB@@LB@Position - mRNA 162 -- 173@LB@Position - sRNA 130 -- 141@LB@Position Seed - mRNA 166 -- 172@LB@Position Seed - sRNA 131 -- 137@LB@ |
| 130 |
0.00652 |
0.1774 |
stm4228 |
malF |
-14.47 |
0.143021 |
162 -- 175 |
1 -- 15 |
maltose ABC transporter permease MalF |
|
_____________161_____________176\n_____________|_______________|\n5'-AAC...ACAUC_______________UUCAA...UAA-3'\n______________UCCGGC_CAGGAAGU\n______________||||||_||||||||\n______________AGGCCG_GUCCUUCA\n3'-UUU...AAGCA______A________-5'\n_____________|______________|\n_____________16_____________1\n |
169 -- 175 |
1 -- 7 |
-25.2779 kcal/mol |
6.67863 kcal/mol |
4.81264 kcal/mol |
161 176@LB@ | |@LB@5'-AAC...ACAUC UUCAA...UAA-3'@LB@ UCCGGC CAGGAAGU@LB@ |||||| ||||||||@LB@ AGGCCG GUCCUUCA@LB@3'-UUU...AAGCA A -5'@LB@ | |@LB@ 16 1@LB@@LB@@LB@Energy -14.47 kcal/mol@LB@Hybridization Energy -25.2779 kcal/mol@LB@Unfolding Energy - mRNA 6.67863 kcal/mol@LB@Unfolding Energy - sRNA 4.81264 kcal/mol@LB@@LB@Position - mRNA 162 -- 175@LB@Position - sRNA 1 -- 15@LB@Position Seed - mRNA 169 -- 175@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 11 |
0.0001804 |
0.05681 |
stm0959 |
lrp |
-12.80 |
0.257711 |
163 -- 181 |
139 -- 159 |
leucine-responsive transcriptional regulator |
|
_____________162_______________________________________________182\n_____________|_________________________________________________|\n5'-UGA...AGAGU________A_____GA________UAC______ACAAUAAUAAU_____AUAGC...AGC-3'\n______________CAGGCAGG_GUAGG_____AGGAA___AGAGAG___________GGUAG\n______________|||:||||_|||::_____|||||___|:|:||___________|||||\n______________GUCUGUCC_CAUUU_____UCCUU___UUUUUC___________CCAUC\n3'-UUU...UACCU______________ACAUG_____CAC______________________AGAGC...UCA-5'\n_____________|_________________________________________________|\n_____________160_______________________________________________138\n |
163 -- 169 |
153 -- 159 |
-28.6161 kcal/mol |
5.81197 kcal/mol |
10.0349 kcal/mol |
162 182@LB@ | |@LB@5'-UGA...AGAGU A GA UAC ACAAUAAUAAU AUAGC...AGC-3'@LB@ CAGGCAGG GUAGG AGGAA AGAGAG GGUAG@LB@ |||:|||| |||:: ||||| |:|:|| |||||@LB@ GUCUGUCC CAUUU UCCUU UUUUUC CCAUC@LB@3'-UUU...UACCU ACAUG CAC AGAGC...UCA-5'@LB@ | |@LB@ 160 138@LB@@LB@@LB@Energy -12.80 kcal/mol@LB@Hybridization Energy -28.6161 kcal/mol@LB@Unfolding Energy - mRNA 5.81197 kcal/mol@LB@Unfolding Energy - sRNA 10.0349 kcal/mol@LB@@LB@Position - mRNA 163 -- 181@LB@Position - sRNA 139 -- 159@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 153 -- 159@LB@ |
| 193 |
0.01075 |
0.197 |
stm3734 |
rph |
-15.48 |
0.098722 |
165 -- 206 |
34 -- 78 |
ribonuclease PH |
|
_____________164____________________________207\n_____________|______________________________|\n5'-GCG...AUAAU_____________U___UUU__________AUCUC...GAG-3'\n______________GCGCAGC__CACA_UCG___UAAGCCGGAG\n______________:|:||:|__||||_:||___||||||::|:\n______________UGUGUUG__GUGU_GGC___AUUCGGUUUU\n3'-UUU...GUUGU_______UA____U________________CGGGU...UCA-5'\n_____________|______________________________|\n_____________79_____________________________33\n |
183 -- 189 |
55 -- 61 |
-24.9708 kcal/mol |
4.11178 kcal/mol |
11.3295 kcal/mol |
164 207@LB@ | |@LB@5'-GCG...AUAAU U UUU AUCUC...GAG-3'@LB@ GCGCAGC CACA UCG UAAGCCGGAG@LB@ :|:||:| |||| :|| ||||||::|:@LB@ UGUGUUG GUGU GGC AUUCGGUUUU@LB@3'-UUU...GUUGU UA U CGGGU...UCA-5'@LB@ | |@LB@ 79 33@LB@@LB@@LB@Energy -15.48 kcal/mol@LB@Hybridization Energy -24.9708 kcal/mol@LB@Unfolding Energy - mRNA 4.11178 kcal/mol@LB@Unfolding Energy - sRNA 11.3295 kcal/mol@LB@@LB@Position - mRNA 165 -- 206@LB@Position - sRNA 34 -- 78@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 55 -- 61@LB@ |
| 30 |
0.0007612 |
0.08814 |
stm3909 |
ilvC |
-21.15 |
0.011132 |
166 -- 188 |
66 -- 89 |
ketol-acid reductoisomerase |
|
_____________165_____________________189\n_____________|_______________________|\n5'-CCA...AACAA_______________________GGAGU...GCU-3'\n______________UAAGCGCGAC_ACACAACAUCAC\n______________:||:|:|:||_||||||||||||\n______________GUUUGUGUUG_UGUGUUGUAGUG\n3'-UUU...UUAAC__________U____________UUGGC...UCA-5'\n_____________|_______________________|\n_____________90______________________65\n |
181 -- 187 |
67 -- 73 |
-29.859 kcal/mol |
2.61707 kcal/mol |
5.66809 kcal/mol |
165 189@LB@ | |@LB@5'-CCA...AACAA GGAGU...GCU-3'@LB@ UAAGCGCGAC ACACAACAUCAC@LB@ :||:|:|:|| ||||||||||||@LB@ GUUUGUGUUG UGUGUUGUAGUG@LB@3'-UUU...UUAAC U UUGGC...UCA-5'@LB@ | |@LB@ 90 65@LB@@LB@@LB@Energy -21.15 kcal/mol@LB@Hybridization Energy -29.859 kcal/mol@LB@Unfolding Energy - mRNA 2.61707 kcal/mol@LB@Unfolding Energy - sRNA 5.66809 kcal/mol@LB@@LB@Position - mRNA 166 -- 188@LB@Position - sRNA 66 -- 89@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 67 -- 73@LB@ |
| 149 |
0.007892 |
0.1845 |
stm2071 |
hisG |
-15.61 |
0.094042 |
166 -- 245 |
36 -- 100 |
ATP phosphoribosyltransferase |
|
_____________165________________________246\n_____________|__________________________|\n5'-UUU...AGACC__UU________A________G____ACGCA...AUU-3'\n______________GG__CAGACAGG_UAA____A_AGGA\n______________||__||||||||_|||____|_||||\n______________CC__GUCUGUCC_AUU____U_UCCU\n3'-UUU...UGAUA__U_________C___UACA_G____UCACU...UCA-5'\n_____________|__________________________|\n_____________101________________________35\n |
177 -- 183 |
153 -- 159 |
-19.7047 kcal/mol |
3.01127 kcal/mol |
3.70983 kcal/mol |
165 246@LB@ | |@LB@5'-UUU...AGACC UU A G ACGCA...AUU-3'@LB@ GG CAGACAGG UAA A AGGA@LB@ || |||||||| ||| | ||||@LB@ CC GUCUGUCC AUU U UCCU@LB@3'-UUU...UGAUA U C UACA G UCACU...UCA-5'@LB@ | |@LB@ 101 35@LB@@LB@@LB@Energy -15.61 kcal/mol@LB@Hybridization Energy -19.7047 kcal/mol@LB@Unfolding Energy - mRNA 3.01127 kcal/mol@LB@Unfolding Energy - sRNA 3.70983 kcal/mol@LB@@LB@Position - mRNA 166 -- 245@LB@Position - sRNA 36 -- 100@LB@Position Seed - mRNA 177 -- 183@LB@Position Seed - sRNA 153 -- 159@LB@ |
| 75 |
0.003517 |
0.1596 |
stm1214 |
ycfR |
-14.36 |
0.148951 |
168 -- 212 |
35 -- 81 |
multiple stress resistance protein BhsA |
stm0823 |
_____________167______________213\n_____________|________________|\n5'-AAA...ACCAC_________CA_____AUUCA...AAC-3'\n______________UUCUGGCUC___GAGU\n______________|||:|||||___:|||\n______________AAGGCCGAG___UUCA\n3'-UUU...AAAGC_________UCC____-5'\n_____________|_______________|\n_____________82______________35\n |
15 -- 21 |
8 -- 14 |
-15.9373 kcal/mol |
4.12962 kcal/mol |
4.82557 kcal/mol |
167 213@LB@ | |@LB@5'-AAA...ACCAC CA AUUCA...AAC-3'@LB@ UUCUGGCUC GAGU@LB@ |||:||||| :|||@LB@ AAGGCCGAG UUCA@LB@3'-UUU...AAAGC UCC -5'@LB@ | |@LB@ 82 35@LB@@LB@@LB@Energy -14.36 kcal/mol@LB@Hybridization Energy -15.9373 kcal/mol@LB@Unfolding Energy - mRNA 4.12962 kcal/mol@LB@Unfolding Energy - sRNA 4.82557 kcal/mol@LB@@LB@Position - mRNA 168 -- 212@LB@Position - sRNA 35 -- 81@LB@Position Seed - mRNA 15 -- 21@LB@Position Seed - sRNA 8 -- 14@LB@ |
| 5 |
6.363e-05 |
0.04123 |
stm0399 |
brnQ |
-24.27 |
0.003272 |
169 -- 224 |
36 -- 81 |
branched-chain amino acid transport system II carrier protein |
|
_____________168_______________________________________________________________225\n_____________|_________________________________________________________________|\n5'-AAC...UUUAA___U_________U________C_____G_A_____A__UUAU_A________UUAAAAU_____GAUAU...UCG-3'\n______________UGU___UACAACA_CAC__CAU_CACAG_C_GUAAG_CU____G_CCCAUCAG_______CGCGC\n______________||:___:||||||_|||__|||_||||:_|_|||||_|:____|_||||||||_______|:|||\n______________ACG___GUGUUGU_GUG__GUA_GUGUU_G_CAUUC_GG____C_GGGUAGUC_______GUGCG\n3'-UUU...GGUUA___UUU_______U___UU_________G__________UUUU__________UU__________UAAGG...UCA-5'\n_____________|_________________________________________________________________|\n_____________82________________________________________________________________35\n |
205 -- 211 |
44 -- 50 |
-45.9704 kcal/mol |
7.09165 kcal/mol |
22.503 kcal/mol |
168 225@LB@ | |@LB@5'-AAC...UUUAA U U C G A A UUAU A UUAAAAU GAUAU...UCG-3'@LB@ UGU UACAACA CAC CAU CACAG C GUAAG CU G CCCAUCAG CGCGC@LB@ ||: :|||||| ||| ||| ||||: | ||||| |: | |||||||| |:|||@LB@ ACG GUGUUGU GUG GUA GUGUU G CAUUC GG C GGGUAGUC GUGCG@LB@3'-UUU...GGUUA UUU U UU G UUUU UU UAAGG...UCA-5'@LB@ | |@LB@ 82 35@LB@@LB@@LB@Energy -24.27 kcal/mol@LB@Hybridization Energy -45.9704 kcal/mol@LB@Unfolding Energy - mRNA 7.09165 kcal/mol@LB@Unfolding Energy - sRNA 22.503 kcal/mol@LB@@LB@Position - mRNA 169 -- 224@LB@Position - sRNA 36 -- 81@LB@Position Seed - mRNA 205 -- 211@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 155 |
0.008213 |
0.1845 |
stm3112 |
mltC |
-21.66 |
0.009126 |
170 -- 198 |
62 -- 90 |
murein transglycosylase C |
|
_____________169____________________________199\n_____________|______________________________|\n5'-UAA...ACAUG___UA________________G___UC___GAAUG...UCA-3'\n______________GCA___ACGACAACACAACAU_CAC__CCG\n______________|||___||:||||||||||||_|||__|||\n______________CGU___UGUUGUUGUGUUGUA_GUG__GGC\n3'-UUU...GUUAA___UUG___________________UU___AUUCG...UCA-5'\n_____________|______________________________|\n_____________91_____________________________61\n |
183 -- 189 |
70 -- 76 |
-33.7206 kcal/mol |
4.25464 kcal/mol |
8.62576 kcal/mol |
169 199@LB@ | |@LB@5'-UAA...ACAUG UA G UC GAAUG...UCA-3'@LB@ GCA ACGACAACACAACAU CAC CCG@LB@ ||| ||:|||||||||||| ||| |||@LB@ CGU UGUUGUUGUGUUGUA GUG GGC@LB@3'-UUU...GUUAA UUG UU AUUCG...UCA-5'@LB@ | |@LB@ 91 61@LB@@LB@@LB@Energy -21.66 kcal/mol@LB@Hybridization Energy -33.7206 kcal/mol@LB@Unfolding Energy - mRNA 4.25464 kcal/mol@LB@Unfolding Energy - sRNA 8.62576 kcal/mol@LB@@LB@Position - mRNA 170 -- 198@LB@Position - sRNA 62 -- 90@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 70 -- 76@LB@ |
