| 101 |
0.005473 |
0.1855 |
b1129 |
phoQ |
-8.66 |
0.244665 |
211 -- 219 |
79 -- 87 |
sensory histidine kinase in two-component regulatory system with PhoP |
|
_____________210_______220\n_____________|_________|\n5'-AUG...AAAAU_________UUUUU...GAA-3'\n______________UACUGCGUC\n______________|||||||:|\n______________AUGACGCGG\n3'-UUU...CGCUU_________UUGUG...GUG-5'\n_____________|_________|\n_____________88________78\n |
213 -- 219 |
79 -- 85 |
-14.7172 kcal/mol |
1.01485 kcal/mol |
5.0453 kcal/mol |
210 220@LB@ | |@LB@5'-AUG...AAAAU UUUUU...GAA-3'@LB@ UACUGCGUC@LB@ |||||||:|@LB@ AUGACGCGG@LB@3'-UUU...CGCUU UUGUG...GUG-5'@LB@ | |@LB@ 88 78@LB@@LB@@LB@Energy -8.66 kcal/mol@LB@Hybridization Energy -14.7172 kcal/mol@LB@Unfolding Energy - mRNA 1.01485 kcal/mol@LB@Unfolding Energy - sRNA 5.0453 kcal/mol@LB@@LB@Position - mRNA 211 -- 219@LB@Position - sRNA 79 -- 87@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 79 -- 85@LB@ |
| 102 |
0.005508 |
0.1855 |
b0659 |
ybeY |
-7.73 |
0.351978 |
30 -- 54 |
64 -- 89 |
ssRNA-specific endoribonuclease; 16S rRNA 3' end maturation and quality control co-endoribonuclease working with RNase R; rRNA transcription antitermination factor |
|
_____________29_________________________55\n_____________|__________________________|\n5'-ACU...AUCGA__________________AA______AGCUU...CGC-3'\n______________AGUGCUG_GCCGAUGUCG__GAGAUC\n______________|:|:|||_|||:|:::|:__||:|||\n______________UUAUGAC_CGGUUGUGGU__CUUUAG\n3'-UUU...CGCGC_______G__________CC______AACCG...GUG-5'\n_____________|__________________________|\n_____________90_________________________63\n |
30 -- 36 |
83 -- 89 |
-23.8058 kcal/mol |
8.19456 kcal/mol |
7.88317 kcal/mol |
29 55@LB@ | |@LB@5'-ACU...AUCGA AA AGCUU...CGC-3'@LB@ AGUGCUG GCCGAUGUCG GAGAUC@LB@ |:|:||| |||:|:::|: ||:|||@LB@ UUAUGAC CGGUUGUGGU CUUUAG@LB@3'-UUU...CGCGC G CC AACCG...GUG-5'@LB@ | |@LB@ 90 63@LB@@LB@@LB@Energy -7.73 kcal/mol@LB@Hybridization Energy -23.8058 kcal/mol@LB@Unfolding Energy - mRNA 8.19456 kcal/mol@LB@Unfolding Energy - sRNA 7.88317 kcal/mol@LB@@LB@Position - mRNA 30 -- 54@LB@Position - sRNA 64 -- 89@LB@Position Seed - mRNA 30 -- 36@LB@Position Seed - sRNA 83 -- 89@LB@ |
| 103 |
0.005609 |
0.1855 |
b2912 |
fau |
-11.92 |
0.059425 |
103 -- 124 |
64 -- 85 |
5-formyltetrahydrofolate cyclo-ligase family protein |
|
_____________102____________________125\n_____________|______________________|\n5'-GAA...ACAGC_____G_______UC_______CCCUU...UGG-3'\n______________CUGCG_CGGCAUC__GGAGAUU\n______________|||||_|::||:|__|||:||:\n______________GACGC_GUUGUGG__CCUUUAG\n3'-UUU...CUUAU_____G_______UC_______AACCG...GUG-5'\n_____________|______________________|\n_____________86_____________________63\n |
118 -- 124 |
64 -- 70 |
-27.7471 kcal/mol |
8.44142 kcal/mol |
7.38387 kcal/mol |
102 125@LB@ | |@LB@5'-GAA...ACAGC G UC CCCUU...UGG-3'@LB@ CUGCG CGGCAUC GGAGAUU@LB@ ||||| |::||:| |||:||:@LB@ GACGC GUUGUGG CCUUUAG@LB@3'-UUU...CUUAU G UC AACCG...GUG-5'@LB@ | |@LB@ 86 63@LB@@LB@@LB@Energy -11.92 kcal/mol@LB@Hybridization Energy -27.7471 kcal/mol@LB@Unfolding Energy - mRNA 8.44142 kcal/mol@LB@Unfolding Energy - sRNA 7.38387 kcal/mol@LB@@LB@Position - mRNA 103 -- 124@LB@Position - sRNA 64 -- 85@LB@Position Seed - mRNA 118 -- 124@LB@Position Seed - sRNA 64 -- 70@LB@ |
| 104 |
0.005642 |
0.1855 |
b1476 |
fdnI |
-8.74 |
0.236866 |
280 -- 291 |
51 -- 62 |
formate dehydrogenase-N cytochrome B556 (gamma) subunit nitrate-inducible |
|
_____________279__________292\n_____________|____________|\n5'-CGU...CUUCC____G_______CCGGG...UUU-3'\n______________UGGU_GCGCUGU\n______________|||:_||||:||\n______________ACCG_CGCGGCA\n3'-UUU...UUAGA____A_______UUUAA...GUG-5'\n_____________|____________|\n_____________63___________50\n |
285 -- 291 |
51 -- 57 |
-16.7644 kcal/mol |
3.14516 kcal/mol |
4.8826 kcal/mol |
279 292@LB@ | |@LB@5'-CGU...CUUCC G CCGGG...UUU-3'@LB@ UGGU GCGCUGU@LB@ |||: ||||:||@LB@ ACCG CGCGGCA@LB@3'-UUU...UUAGA A UUUAA...GUG-5'@LB@ | |@LB@ 63 50@LB@@LB@@LB@Energy -8.74 kcal/mol@LB@Hybridization Energy -16.7644 kcal/mol@LB@Unfolding Energy - mRNA 3.14516 kcal/mol@LB@Unfolding Energy - sRNA 4.8826 kcal/mol@LB@@LB@Position - mRNA 280 -- 291@LB@Position - sRNA 51 -- 62@LB@Position Seed - mRNA 285 -- 291@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 105 |
0.005654 |
0.1855 |
b0004 |
thrC |
-10.56 |
0.108775 |
227 -- 299 |
1 -- 79 |
L-threonine synthase |
|
_____________226_____________________________________________________________________________________300\n_____________|_______________________________________________________________________________________|\n5'-CGC...GAUCA____G_G____UCAG____U__GCAA_______CCCAG____________________AAAAU___GG___________________G-3'\n______________CAAC_A_CAGG_____CUU_GC____GCCGUAA___________GGGUU____GGGCA_____CAG__GCUGUUUUUU___CCGCAC\n______________||||_|_||||_____|||_||____|||||||___________|:|||____|||||_____|||__:||||||||:___||||||\n______________GUUG_U_GUCC_____GAA_CG____CGGCAUU___________CUCAA____CCCGU_____GUC__UGACAAAAAG___GGCGUG\n3'-UUU...ACGCG______G____CUUUA___C__ACG________UAAUAAUACUA_____UGUU_____________G___________UCC______-5'\n_____________|______________________________________________________________________________________|\n_____________80_____________________________________________________________________________________1\n |
287 -- 293 |
10 -- 16 |
-55.9039 kcal/mol |
22.5864 kcal/mol |
22.7537 kcal/mol |
226 300@LB@ | |@LB@5'-CGC...GAUCA G G UCAG U GCAA CCCAG AAAAU GG G-3'@LB@ CAAC A CAGG CUU GC GCCGUAA GGGUU GGGCA CAG GCUGUUUUUU CCGCAC@LB@ |||| | |||| ||| || ||||||| |:||| ||||| ||| :||||||||: ||||||@LB@ GUUG U GUCC GAA CG CGGCAUU CUCAA CCCGU GUC UGACAAAAAG GGCGUG@LB@3'-UUU...ACGCG G CUUUA C ACG UAAUAAUACUA UGUU G UCC -5'@LB@ | |@LB@ 80 1@LB@@LB@@LB@Energy -10.56 kcal/mol@LB@Hybridization Energy -55.9039 kcal/mol@LB@Unfolding Energy - mRNA 22.5864 kcal/mol@LB@Unfolding Energy - sRNA 22.7537 kcal/mol@LB@@LB@Position - mRNA 227 -- 299@LB@Position - sRNA 1 -- 79@LB@Position Seed - mRNA 287 -- 293@LB@Position Seed - sRNA 10 -- 16@LB@ |
| 106 |
0.005731 |
0.1855 |
b0867 |
amiD |
-15.82 |
0.010089 |
39 -- 60 |
64 -- 86 |
1 6-anhydro-N-acetylmuramyl-L-alanine amidase Zn-dependent; OM lipoprotein |
|
_____________38_______________________61\n_____________|________________________|\n5'-GAU...AAAGA_______AA_______________GCCUU...CCC-3'\n______________ACUGCGU__AGCAC__GGGAGAUC\n______________||||||:__|:|||__||||:|||\n______________UGACGCG__UUGUG__CCCUUUAG\n3'-UUU...GCUUA_______G______GU________AACCG...GUG-5'\n_____________|________________________|\n_____________87_______________________63\n |
54 -- 60 |
64 -- 70 |
-27.7093 kcal/mol |
4.50209 kcal/mol |
7.38435 kcal/mol |
38 61@LB@ | |@LB@5'-GAU...AAAGA AA GCCUU...CCC-3'@LB@ ACUGCGU AGCAC GGGAGAUC@LB@ ||||||: |:||| ||||:|||@LB@ UGACGCG UUGUG CCCUUUAG@LB@3'-UUU...GCUUA G GU AACCG...GUG-5'@LB@ | |@LB@ 87 63@LB@@LB@@LB@Energy -15.82 kcal/mol@LB@Hybridization Energy -27.7093 kcal/mol@LB@Unfolding Energy - mRNA 4.50209 kcal/mol@LB@Unfolding Energy - sRNA 7.38435 kcal/mol@LB@@LB@Position - mRNA 39 -- 60@LB@Position - sRNA 64 -- 86@LB@Position Seed - mRNA 54 -- 60@LB@Position Seed - sRNA 64 -- 70@LB@ |
| 107 |
0.005754 |
0.1855 |
b3447 |
ggt |
-8.41 |
0.270031 |
252 -- 270 |
52 -- 70 |
gamma-glutamyltranspeptidase |
|
_____________251_________________271\n_____________|___________________|\n5'-GUU...UCUCA_______GUUUUA______CCGCC...CGU-3'\n______________GGAAGUU______GCGCCG\n______________||||:|:______||||||\n______________CCUUUAG______CGCGGC\n3'-UUU...UGGUC_______AACCGA______AUUUA...GUG-5'\n_____________|___________________|\n_____________71__________________51\n |
252 -- 258 |
64 -- 70 |
-19.4063 kcal/mol |
4.14766 kcal/mol |
6.84683 kcal/mol |
251 271@LB@ | |@LB@5'-GUU...UCUCA GUUUUA CCGCC...CGU-3'@LB@ GGAAGUU GCGCCG@LB@ ||||:|: ||||||@LB@ CCUUUAG CGCGGC@LB@3'-UUU...UGGUC AACCGA AUUUA...GUG-5'@LB@ | |@LB@ 71 51@LB@@LB@@LB@Energy -8.41 kcal/mol@LB@Hybridization Energy -19.4063 kcal/mol@LB@Unfolding Energy - mRNA 4.14766 kcal/mol@LB@Unfolding Energy - sRNA 6.84683 kcal/mol@LB@@LB@Position - mRNA 252 -- 270@LB@Position - sRNA 52 -- 70@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 64 -- 70@LB@ |
| 108 |
0.005783 |
0.1855 |
b3951 |
pflD |
-15.90 |
0.009733 |
233 -- 258 |
63 -- 86 |
putative glycine radical domain-containing pyruvate formate-lyase |
b0823 |
_____________232________________________259\n_____________|__________________________|\n5'-GAU...ACUGC_____UU_________C_U_______CGCUG...AAA-3'\n______________ACUGU__GCCAAUACC_G_GAAAUCU\n______________||||:__|||||:|||_|_|||||||\n______________UGACG__CGGUUGUGG_C_CUUUAGA\n3'-UUU...GCUUA________________U_C_______ACCGA...GUG-5'\n_____________|__________________________|\n_____________87_________________________62\n |
252 -- 258 |
63 -- 69 |
-27.9307 kcal/mol |
4.64309 kcal/mol |
7.38602 kcal/mol |
232 259@LB@ | |@LB@5'-GAU...ACUGC UU C U CGCUG...AAA-3'@LB@ ACUGU GCCAAUACC G GAAAUCU@LB@ ||||: |||||:||| | |||||||@LB@ UGACG CGGUUGUGG C CUUUAGA@LB@3'-UUU...GCUUA U C ACCGA...GUG-5'@LB@ | |@LB@ 87 62@LB@@LB@@LB@Energy -15.90 kcal/mol@LB@Hybridization Energy -27.9307 kcal/mol@LB@Unfolding Energy - mRNA 4.64309 kcal/mol@LB@Unfolding Energy - sRNA 7.38602 kcal/mol@LB@@LB@Position - mRNA 233 -- 258@LB@Position - sRNA 63 -- 86@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 63 -- 69@LB@ |
| 109 |
0.005919 |
0.1855 |
b3807 |
cyaY |
-12.33 |
0.049473 |
23 -- 64 |
29 -- 73 |
iron-dependent inhibitor of iron-sulfur cluster formation; frataxin; iron-binding and oxidizing protein |
|
_____________22__________________________________________________65\n_____________|___________________________________________________|\n5'-UGA...AGAAA________GACG___UGUAA_______C_____________A_________AUCUU...AAA-3'\n______________CAGGGAAA____UGG_____CUGCGCC_UA_______AUGA_GAG__ACAA\n______________||||||||____|||_____|||||||_||_______||||_|||__||||\n______________GUCCCUUU____ACC_____GACGCGG_AU_______UACU_CUC__UGUU\n3'-UUU...UUGUG________AGA________________C__UUAAUAA____A___AA____CCCGU...GUG-5'\n_____________|___________________________________________________|\n_____________74__________________________________________________28\n |
43 -- 49 |
53 -- 59 |
-33.7794 kcal/mol |
12.1445 kcal/mol |
9.30637 kcal/mol |
22 65@LB@ | |@LB@5'-UGA...AGAAA GACG UGUAA C A AUCUU...AAA-3'@LB@ CAGGGAAA UGG CUGCGCC UA AUGA GAG ACAA@LB@ |||||||| ||| ||||||| || |||| ||| ||||@LB@ GUCCCUUU ACC GACGCGG AU UACU CUC UGUU@LB@3'-UUU...UUGUG AGA C UUAAUAA A AA CCCGU...GUG-5'@LB@ | |@LB@ 74 28@LB@@LB@@LB@Energy -12.33 kcal/mol@LB@Hybridization Energy -33.7794 kcal/mol@LB@Unfolding Energy - mRNA 12.1445 kcal/mol@LB@Unfolding Energy - sRNA 9.30637 kcal/mol@LB@@LB@Position - mRNA 23 -- 64@LB@Position - sRNA 29 -- 73@LB@Position Seed - mRNA 43 -- 49@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 110 |
0.005921 |
0.1855 |
b0156 |
erpA |
-16.74 |
0.006653 |
106 -- 166 |
29 -- 94 |
iron-sulfur cluster insertion protein |
|
_____________105______________________________________________________________________167\n_____________|________________________________________________________________________|\n5'-UAG...AGCCA___A______U__AA_GA__________UAUU____AA_______________________________G__UUUGC...UAC-3'\n______________GCG_GAAUAC_UG__C__AAUACCAGGG____AGAU__UGGC_________GAUUAUUAU__UGGGUUA_AA\n______________|||_||||||_||__|__||:|||||||____|:||__||||_________:||||||||__||:||||_||\n______________CGC_CUUAUG_AC__G__UUGUGGUCCC____UUUA__ACCG_________UUAAUAAUA__ACUCAAU_UU\n3'-UUU...CCCCA___G_________GC_G___________________GA____ACGCGGCAU_________CU_______G__CCCGU...GUG-5'\n_____________|________________________________________________________________________|\n_____________95_______________________________________________________________________28\n |
157 -- 163 |
32 -- 38 |
-45.8064 kcal/mol |
11.5894 kcal/mol |
17.4809 kcal/mol |
105 167@LB@ | |@LB@5'-UAG...AGCCA A U AA GA UAUU AA G UUUGC...UAC-3'@LB@ GCG GAAUAC UG C AAUACCAGGG AGAU UGGC GAUUAUUAU UGGGUUA AA@LB@ ||| |||||| || | ||:||||||| |:|| |||| :|||||||| ||:|||| ||@LB@ CGC CUUAUG AC G UUGUGGUCCC UUUA ACCG UUAAUAAUA ACUCAAU UU@LB@3'-UUU...CCCCA G GC G GA ACGCGGCAU CU G CCCGU...GUG-5'@LB@ | |@LB@ 95 28@LB@@LB@@LB@Energy -16.74 kcal/mol@LB@Hybridization Energy -45.8064 kcal/mol@LB@Unfolding Energy - mRNA 11.5894 kcal/mol@LB@Unfolding Energy - sRNA 17.4809 kcal/mol@LB@@LB@Position - mRNA 106 -- 166@LB@Position - sRNA 29 -- 94@LB@Position Seed - mRNA 157 -- 163@LB@Position Seed - sRNA 32 -- 38@LB@ |
