95 |
0.009629 |
0.3104 |
b0781 |
moaA |
-11.57 |
0.065137 |
257 -- 279 |
1 -- 21 |
molybdopterin biosynthesis protein A |
|
_____________256_____________________280\n_____________|_______________________|\n5'-ACG...CUGUC___U__C_________AA_____GUUGC...CGG-3'\n______________GAU_AC_GAUGUGUGU__CUUUC\n______________|||_||_:|||:|:||__|||||\n______________CUA_UG_UUACGCGCA__GAAAG\n3'-UUU...UACUA___U__U________________-5'\n_____________|______________________|\n_____________22_____________________1\n |
266 -- 272 |
6 -- 12 |
-18.6522 kcal/mol |
5.82624 kcal/mol |
1.25763 kcal/mol |
256 280@LB@ | |@LB@5'-ACG...CUGUC U C AA GUUGC...CGG-3'@LB@ GAU AC GAUGUGUGU CUUUC@LB@ ||| || :|||:|:|| |||||@LB@ CUA UG UUACGCGCA GAAAG@LB@3'-UUU...UACUA U U -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -11.57 kcal/mol@LB@Hybridization Energy -18.6522 kcal/mol@LB@Unfolding Energy - mRNA 5.82624 kcal/mol@LB@Unfolding Energy - sRNA 1.25763 kcal/mol@LB@@LB@Position - mRNA 257 -- 279@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 6 -- 12@LB@ |
97 |
0.009805 |
0.3104 |
b1306 |
pspC |
-10.74 |
0.090670 |
128 -- 139 |
7 -- 18 |
psp operon transcription co-activator |
|
_____________127__________140\n_____________|____________|\n5'-CCG...AGCAA____________AACGU...CGG-3'\n______________AACGGAUGCGCG\n______________|||::|||||||\n______________UUGUUUACGCGC\n3'-UUU...UACUA____________AGAAAG-5'\n_____________|____________|\n_____________19___________6\n |
133 -- 139 |
7 -- 13 |
-18.5075 kcal/mol |
6.55818 kcal/mol |
1.20891 kcal/mol |
127 140@LB@ | |@LB@5'-CCG...AGCAA AACGU...CGG-3'@LB@ AACGGAUGCGCG@LB@ |||::|||||||@LB@ UUGUUUACGCGC@LB@3'-UUU...UACUA AGAAAG-5'@LB@ | |@LB@ 19 6@LB@@LB@@LB@Energy -10.74 kcal/mol@LB@Hybridization Energy -18.5075 kcal/mol@LB@Unfolding Energy - mRNA 6.55818 kcal/mol@LB@Unfolding Energy - sRNA 1.20891 kcal/mol@LB@@LB@Position - mRNA 128 -- 139@LB@Position - sRNA 7 -- 18@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 7 -- 13@LB@ |
98 |
0.009835 |
0.3104 |
b1213 |
ychQ |
-13.77 |
0.026325 |
164 -- 179 |
6 -- 23 |
SIRB family inner membrane protein |
|
_____________163________________180\n_____________|__________________|\n5'-GAC...CUAUG__________________AACGC...AUC-3'\n______________GUGAUAACGA__GCGCGU\n______________:|||||||:|__||||||\n______________UACUAUUGUU__CGCGCA\n3'-UUU...CCUAC__________UA______GAAAG-5'\n_____________|__________________|\n_____________24_________________5\n |
167 -- 173 |
14 -- 20 |
-20.3809 kcal/mol |
4.08318 kcal/mol |
2.52311 kcal/mol |
163 180@LB@ | |@LB@5'-GAC...CUAUG AACGC...AUC-3'@LB@ GUGAUAACGA GCGCGU@LB@ :|||||||:| ||||||@LB@ UACUAUUGUU CGCGCA@LB@3'-UUU...CCUAC UA GAAAG-5'@LB@ | |@LB@ 24 5@LB@@LB@@LB@Energy -13.77 kcal/mol@LB@Hybridization Energy -20.3809 kcal/mol@LB@Unfolding Energy - mRNA 4.08318 kcal/mol@LB@Unfolding Energy - sRNA 2.52311 kcal/mol@LB@@LB@Position - mRNA 164 -- 179@LB@Position - sRNA 6 -- 23@LB@Position Seed - mRNA 167 -- 173@LB@Position Seed - sRNA 14 -- 20@LB@ |
99 |
0.009943 |
0.3104 |
b3405 |
ompR |
-10.46 |
0.101388 |
231 -- 245 |
8 -- 21 |
response regulator in two-component regulatory system with EnvZ |
|
_____________230_____________246\n_____________|_______________|\n5'-AAU...UGGUC________C______CUGCG...GCG-3'\n______________GAUGACGA_AUGCGC\n______________|||:||:|_||||||\n______________CUAUUGUU_UACGCG\n3'-UUU...UACUA_______________CAGAAAG-5'\n_____________|_______________|\n_____________22______________7\n |
232 -- 238 |
14 -- 20 |
-17.2341 kcal/mol |
5.5408 kcal/mol |
1.23638 kcal/mol |
230 246@LB@ | |@LB@5'-AAU...UGGUC C CUGCG...GCG-3'@LB@ GAUGACGA AUGCGC@LB@ |||:||:| ||||||@LB@ CUAUUGUU UACGCG@LB@3'-UUU...UACUA CAGAAAG-5'@LB@ | |@LB@ 22 7@LB@@LB@@LB@Energy -10.46 kcal/mol@LB@Hybridization Energy -17.2341 kcal/mol@LB@Unfolding Energy - mRNA 5.5408 kcal/mol@LB@Unfolding Energy - sRNA 1.23638 kcal/mol@LB@@LB@Position - mRNA 231 -- 245@LB@Position - sRNA 8 -- 21@LB@Position Seed - mRNA 232 -- 238@LB@Position Seed - sRNA 14 -- 20@LB@ |
100 |
0.01004 |
0.3104 |
b3166 |
truB |
-9.42 |
0.151044 |
113 -- 128 |
5 -- 18 |
tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase |
|
_____________112______________129\n_____________|________________|\n5'-GGC...GGUUG__G________AU___AAACC...AAC-3'\n______________AA_GGAUGCGC__GUC\n______________||_::||||||__|||\n______________UU_UUUACGCG__CAG\n3'-UUU...UACUA__G_____________AAAG-5'\n_____________|________________|\n_____________19_______________4\n |
117 -- 123 |
8 -- 14 |
-15.4757 kcal/mol |
4.82661 kcal/mol |
1.2243 kcal/mol |
112 129@LB@ | |@LB@5'-GGC...GGUUG G AU AAACC...AAC-3'@LB@ AA GGAUGCGC GUC@LB@ || ::|||||| |||@LB@ UU UUUACGCG CAG@LB@3'-UUU...UACUA G AAAG-5'@LB@ | |@LB@ 19 4@LB@@LB@@LB@Energy -9.42 kcal/mol@LB@Hybridization Energy -15.4757 kcal/mol@LB@Unfolding Energy - mRNA 4.82661 kcal/mol@LB@Unfolding Energy - sRNA 1.2243 kcal/mol@LB@@LB@Position - mRNA 113 -- 128@LB@Position - sRNA 5 -- 18@LB@Position Seed - mRNA 117 -- 123@LB@Position Seed - sRNA 8 -- 14@LB@ |
101 |
0.01005 |
0.3104 |
b3288 |
fmt |
-10.27 |
0.109217 |
249 -- 255 |
5 -- 11 |
10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase |
|
_____________248_____256\n_____________|_______|\n5'-AUU...UUGCA_______AUCUC...UGU-3'\n______________GCGCGUC\n______________|||||||\n______________CGCGCAG\n3'-UUU...GUUUA_______AAAG-5'\n_____________|_______|\n_____________12______4\n |
249 -- 255 |
5 -- 11 |
-14.5658 kcal/mol |
3.18739 kcal/mol |
1.11145 kcal/mol |
248 256@LB@ | |@LB@5'-AUU...UUGCA AUCUC...UGU-3'@LB@ GCGCGUC@LB@ |||||||@LB@ CGCGCAG@LB@3'-UUU...GUUUA AAAG-5'@LB@ | |@LB@ 12 4@LB@@LB@@LB@Energy -10.27 kcal/mol@LB@Hybridization Energy -14.5658 kcal/mol@LB@Unfolding Energy - mRNA 3.18739 kcal/mol@LB@Unfolding Energy - sRNA 1.11145 kcal/mol@LB@@LB@Position - mRNA 249 -- 255@LB@Position - sRNA 5 -- 11@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 5 -- 11@LB@ |
102 |
0.01008 |
0.3104 |
b3500 |
gor |
-8.16 |
0.240292 |
285 -- 295 |
4 -- 15 |
glutathione oxidoreductase |
|
_____________284__________296\n_____________|____________|\n5'-GGC...GCCAG____________GAUUG-3'\n______________AAAUGUGCG_CU\n______________|||||:|||_||\n______________UUUACGCGC_GA\n3'-UUU...UAUUG_________A__AAG-5'\n_____________|____________|\n_____________16___________3\n |
287 -- 293 |
7 -- 13 |
-12.6909 kcal/mol |
3.32128 kcal/mol |
1.20666 kcal/mol |
284 296@LB@ | |@LB@5'-GGC...GCCAG GAUUG-3'@LB@ AAAUGUGCG CU@LB@ |||||:||| ||@LB@ UUUACGCGC GA@LB@3'-UUU...UAUUG A AAG-5'@LB@ | |@LB@ 16 3@LB@@LB@@LB@Energy -8.16 kcal/mol@LB@Hybridization Energy -12.6909 kcal/mol@LB@Unfolding Energy - mRNA 3.32128 kcal/mol@LB@Unfolding Energy - sRNA 1.20666 kcal/mol@LB@@LB@Position - mRNA 285 -- 295@LB@Position - sRNA 4 -- 15@LB@Position Seed - mRNA 287 -- 293@LB@Position Seed - sRNA 7 -- 13@LB@ |
103 |
0.01026 |
0.3104 |
b1083 |
flgL |
-8.46 |
0.215699 |
195 -- 209 |
5 -- 21 |
flagellar hook-filament junction protein |
|
_____________194_______________210\n_____________|_________________|\n5'-UUG...GGGGA______________U__AGUAC...GUA-3'\n______________GAUAA__GAUGCGU_UC\n______________|||||__:|||||:_||\n______________CUAUU__UUACGCG_AG\n3'-UUU...UACUA_____GU_______C__AAAG-5'\n_____________|_________________|\n_____________22________________4\n |
200 -- 206 |
8 -- 14 |
-13.0743 kcal/mol |
3.36074 kcal/mol |
1.24955 kcal/mol |
194 210@LB@ | |@LB@5'-UUG...GGGGA U AGUAC...GUA-3'@LB@ GAUAA GAUGCGU UC@LB@ ||||| :|||||: ||@LB@ CUAUU UUACGCG AG@LB@3'-UUU...UACUA GU C AAAG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -8.46 kcal/mol@LB@Hybridization Energy -13.0743 kcal/mol@LB@Unfolding Energy - mRNA 3.36074 kcal/mol@LB@Unfolding Energy - sRNA 1.24955 kcal/mol@LB@@LB@Position - mRNA 195 -- 209@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 8 -- 14@LB@ |
104 |
0.01032 |
0.3104 |
b1714 |
pheS |
-13.82 |
0.025875 |
273 -- 287 |
5 -- 21 |
phenylalanine tRNA synthetase alpha subunit |
|
_____________272_______________288\n_____________|_________________|\n5'-UUG...CGUUA_________________GAAUA...GUA-3'\n______________GAUAAU__GUGCGCGUC\n______________|||||:__:||||||||\n______________CUAUUG__UACGCGCAG\n3'-UUU...UACUA______UU_________AAAG-5'\n_____________|_________________|\n_____________22________________4\n |
281 -- 287 |
5 -- 11 |
-20.2911 kcal/mol |
5.22554 kcal/mol |
1.24955 kcal/mol |
272 288@LB@ | |@LB@5'-UUG...CGUUA GAAUA...GUA-3'@LB@ GAUAAU GUGCGCGUC@LB@ |||||: :||||||||@LB@ CUAUUG UACGCGCAG@LB@3'-UUU...UACUA UU AAAG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -13.82 kcal/mol@LB@Hybridization Energy -20.2911 kcal/mol@LB@Unfolding Energy - mRNA 5.22554 kcal/mol@LB@Unfolding Energy - sRNA 1.24955 kcal/mol@LB@@LB@Position - mRNA 273 -- 287@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 281 -- 287@LB@Position Seed - sRNA 5 -- 11@LB@ |
105 |
0.01074 |
0.3104 |
b3791 |
wecE |
-13.91 |
0.024834 |
1 -- 12 |
7 -- 18 |
TDP-4-oxo-6-deoxy-D-glucose transaminase |
|
______________1___________13\n______________|___________|\n___________5'-____________AAUUG...CCC-3'\n______________GACAGAUGCGCG\n______________:|||:|||||||\n______________UUGUUUACGCGC\n3'-UUU...UACUA____________AGAAAG-5'\n_____________|____________|\n_____________19___________6\n |
6 -- 12 |
7 -- 13 |
-19.4696 kcal/mol |
4.34626 kcal/mol |
1.20891 kcal/mol |
1 13@LB@ | |@LB@ 5'- AAUUG...CCC-3'@LB@ GACAGAUGCGCG@LB@ :|||:|||||||@LB@ UUGUUUACGCGC@LB@3'-UUU...UACUA AGAAAG-5'@LB@ | |@LB@ 19 6@LB@@LB@@LB@Energy -13.91 kcal/mol@LB@Hybridization Energy -19.4696 kcal/mol@LB@Unfolding Energy - mRNA 4.34626 kcal/mol@LB@Unfolding Energy - sRNA 1.20891 kcal/mol@LB@@LB@Position - mRNA 1 -- 12@LB@Position - sRNA 7 -- 18@LB@Position Seed - mRNA 6 -- 12@LB@Position Seed - sRNA 7 -- 13@LB@ |