| 106 |
0.005731 |
0.1855 |
b0867 |
amiD |
-15.82 |
0.010089 |
39 -- 60 |
64 -- 86 |
1 6-anhydro-N-acetylmuramyl-L-alanine amidase Zn-dependent; OM lipoprotein |
|
_____________38_______________________61\n_____________|________________________|\n5'-GAU...AAAGA_______AA_______________GCCUU...CCC-3'\n______________ACUGCGU__AGCAC__GGGAGAUC\n______________||||||:__|:|||__||||:|||\n______________UGACGCG__UUGUG__CCCUUUAG\n3'-UUU...GCUUA_______G______GU________AACCG...GUG-5'\n_____________|________________________|\n_____________87_______________________63\n |
54 -- 60 |
64 -- 70 |
-27.7093 kcal/mol |
4.50209 kcal/mol |
7.38435 kcal/mol |
38 61@LB@ | |@LB@5'-GAU...AAAGA AA GCCUU...CCC-3'@LB@ ACUGCGU AGCAC GGGAGAUC@LB@ ||||||: |:||| ||||:|||@LB@ UGACGCG UUGUG CCCUUUAG@LB@3'-UUU...GCUUA G GU AACCG...GUG-5'@LB@ | |@LB@ 87 63@LB@@LB@@LB@Energy -15.82 kcal/mol@LB@Hybridization Energy -27.7093 kcal/mol@LB@Unfolding Energy - mRNA 4.50209 kcal/mol@LB@Unfolding Energy - sRNA 7.38435 kcal/mol@LB@@LB@Position - mRNA 39 -- 60@LB@Position - sRNA 64 -- 86@LB@Position Seed - mRNA 54 -- 60@LB@Position Seed - sRNA 64 -- 70@LB@ |
| 46 |
0.002359 |
0.1727 |
b4139 |
aspA |
-15.43 |
0.012067 |
239 -- 273 |
37 -- 76 |
aspartate ammonia-lyase |
|
_____________238_______________________________________274\n_____________|_________________________________________|\n5'-GAU...UUGGG_____________CCA____A____________C_______UUCAC...ACU-3'\n______________UACCAGGGAAGUU___GCUG_UGCC______UA_UAUGGUG\n______________:|||||||||:|:___||||_:|||______||_||||:||\n______________GUGGUCCCUUUAG___CGAC_GCGG______AU_AUACUAC\n3'-UUU...CGGUU_____________AAC_________CAUUUA__A_______UCAAU...GUG-5'\n_____________|_________________________________________|\n_____________77________________________________________36\n |
267 -- 273 |
37 -- 43 |
-35.8845 kcal/mol |
11.095 kcal/mol |
9.35931 kcal/mol |
238 274@LB@ | |@LB@5'-GAU...UUGGG CCA A C UUCAC...ACU-3'@LB@ UACCAGGGAAGUU GCUG UGCC UA UAUGGUG@LB@ :|||||||||:|: |||| :||| || ||||:||@LB@ GUGGUCCCUUUAG CGAC GCGG AU AUACUAC@LB@3'-UUU...CGGUU AAC CAUUUA A UCAAU...GUG-5'@LB@ | |@LB@ 77 36@LB@@LB@@LB@Energy -15.43 kcal/mol@LB@Hybridization Energy -35.8845 kcal/mol@LB@Unfolding Energy - mRNA 11.095 kcal/mol@LB@Unfolding Energy - sRNA 9.35931 kcal/mol@LB@@LB@Position - mRNA 239 -- 273@LB@Position - sRNA 37 -- 76@LB@Position Seed - mRNA 267 -- 273@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 7 |
0.0001601 |
0.08054 |
b1864 |
yebC |
-15.40 |
0.012230 |
213 -- 249 |
54 -- 89 |
UPF0082 family protein |
|
_____________212_____________________________________250\n_____________|_______________________________________|\n5'-CGU...GUCAU____AA__G___________AC_____GUAAA_______AGGAU...UAA-3'\n______________AGUA__UG_GCCAACACCAG____AUC_____GCUGCGC\n______________|:||__||_|||||||||||____|||_____|||||||\n______________UUAU__AC_CGGUUGUGGUC____UAG_____CGACGCG\n3'-UUU...CGCGC____G___G___________CCUU___AAC_________GCAUU...GUG-5'\n_____________|_______________________________________|\n_____________90______________________________________53\n |
243 -- 249 |
54 -- 60 |
-38.8431 kcal/mol |
7.10336 kcal/mol |
16.3388 kcal/mol |
212 250@LB@ | |@LB@5'-CGU...GUCAU AA G AC GUAAA AGGAU...UAA-3'@LB@ AGUA UG GCCAACACCAG AUC GCUGCGC@LB@ |:|| || ||||||||||| ||| |||||||@LB@ UUAU AC CGGUUGUGGUC UAG CGACGCG@LB@3'-UUU...CGCGC G G CCUU AAC GCAUU...GUG-5'@LB@ | |@LB@ 90 53@LB@@LB@@LB@Energy -15.40 kcal/mol@LB@Hybridization Energy -38.8431 kcal/mol@LB@Unfolding Energy - mRNA 7.10336 kcal/mol@LB@Unfolding Energy - sRNA 16.3388 kcal/mol@LB@@LB@Position - mRNA 213 -- 249@LB@Position - sRNA 54 -- 89@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 54 -- 60@LB@ |
| 34 |
0.001871 |
0.1727 |
b4485 |
ytfR |
-15.36 |
0.012458 |
204 -- 227 |
64 -- 86 |
putative sugar ABC transporter ATPase |
|
_____________203_______________________228\n_____________|_________________________|\n5'-CCU...CCAUG__GAC__A_________________CUCCG...GCC-3'\n______________AC___CG_CCAACACCA_GGAGAUC\n______________||___||_|||||||||_|||:|||\n______________UG___GC_GGUUGUGGU_CCUUUAG\n3'-UUU...GCUUA__AC_____________C_______AACCG...GUG-5'\n_____________|_________________________|\n_____________87________________________63\n |
221 -- 227 |
64 -- 70 |
-26.9267 kcal/mol |
4.18191 kcal/mol |
7.38435 kcal/mol |
203 228@LB@ | |@LB@5'-CCU...CCAUG GAC A CUCCG...GCC-3'@LB@ AC CG CCAACACCA GGAGAUC@LB@ || || ||||||||| |||:|||@LB@ UG GC GGUUGUGGU CCUUUAG@LB@3'-UUU...GCUUA AC C AACCG...GUG-5'@LB@ | |@LB@ 87 63@LB@@LB@@LB@Energy -15.36 kcal/mol@LB@Hybridization Energy -26.9267 kcal/mol@LB@Unfolding Energy - mRNA 4.18191 kcal/mol@LB@Unfolding Energy - sRNA 7.38435 kcal/mol@LB@@LB@Position - mRNA 204 -- 227@LB@Position - sRNA 64 -- 86@LB@Position Seed - mRNA 221 -- 227@LB@Position Seed - sRNA 64 -- 70@LB@ |
| 93 |
0.005014 |
0.1855 |
b0091 |
murC |
-15.25 |
0.013117 |
8 -- 30 |
73 -- 94 |
UDP-N-acetylmuramate:L-alanine ligase |
|
_____________7_______________________31\n_____________|_______________________|\n____5'-CAGCUUA____________U__________CUGGC...GCG-3'\n______________GCGUGGAUGCUG_CGCCAACACC\n______________|||:|:||:|||_||||||||||\n______________CGCGCUUAUGAC_GCGGUUGUGG\n3'-UUU...CCCCA_______________________UCCCU...GUG-5'\n_____________|_______________________|\n_____________95______________________72\n |
24 -- 30 |
73 -- 79 |
-39.1057 kcal/mol |
11.3 kcal/mol |
12.5321 kcal/mol |
7 31@LB@ | |@LB@ 5'-CAGCUUA U CUGGC...GCG-3'@LB@ GCGUGGAUGCUG CGCCAACACC@LB@ |||:|:||:||| ||||||||||@LB@ CGCGCUUAUGAC GCGGUUGUGG@LB@3'-UUU...CCCCA UCCCU...GUG-5'@LB@ | |@LB@ 95 72@LB@@LB@@LB@Energy -15.25 kcal/mol@LB@Hybridization Energy -39.1057 kcal/mol@LB@Unfolding Energy - mRNA 11.3 kcal/mol@LB@Unfolding Energy - sRNA 12.5321 kcal/mol@LB@@LB@Position - mRNA 8 -- 30@LB@Position - sRNA 73 -- 94@LB@Position Seed - mRNA 24 -- 30@LB@Position Seed - sRNA 73 -- 79@LB@ |
| 17 |
0.0008046 |
0.1666 |
b0590 |
fepD |
-14.87 |
0.015550 |
17 -- 43 |
70 -- 94 |
ferrienterobactin ABC transporter permease |
|
_____________16__________________________44\n_____________|___________________________|\n5'-AAU...AACGA___AG___________GA_________UGCGU...AAU-3'\n______________GCG__GAAUACUGCGC__AACGCCGGG\n______________|||__|||||||||||__|||:||:||\n______________CGC__CUUAUGACGCG__UUGUGGUCC\n3'-UUU...CCCCA___G____________G__________CUUUA...GUG-5'\n_____________|___________________________|\n_____________95__________________________69\n |
37 -- 43 |
70 -- 76 |
-38.1858 kcal/mol |
10.2318 kcal/mol |
13.036 kcal/mol |
16 44@LB@ | |@LB@5'-AAU...AACGA AG GA UGCGU...AAU-3'@LB@ GCG GAAUACUGCGC AACGCCGGG@LB@ ||| ||||||||||| |||:||:||@LB@ CGC CUUAUGACGCG UUGUGGUCC@LB@3'-UUU...CCCCA G G CUUUA...GUG-5'@LB@ | |@LB@ 95 69@LB@@LB@@LB@Energy -14.87 kcal/mol@LB@Hybridization Energy -38.1858 kcal/mol@LB@Unfolding Energy - mRNA 10.2318 kcal/mol@LB@Unfolding Energy - sRNA 13.036 kcal/mol@LB@@LB@Position - mRNA 17 -- 43@LB@Position - sRNA 70 -- 94@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 70 -- 76@LB@ |
| 10 |
0.0003497 |
0.1198 |
b2023 |
hisH |
-14.83 |
0.015853 |
226 -- 277 |
39 -- 86 |
imidazole glycerol phosphate synthase glutamine amidotransferase subunit |
|
_____________225____________________________________________________278\n_____________|______________________________________________________|\n5'-GUG...UACCG___________CUGA___C__U_______GCCA_________CACG________ACCCA...CGG-3'\n______________GCUGCGCCAAC____ACU_GG_GAAGUCU____UUGCG_CGU_____GUUAUGA\n______________:||||||||||____||:_||_|||:|||____:||||_|||_____:||||||\n______________UGACGCGGUUG____UGG_CC_CUUUAGA____GACGC_GCA_____UAAUACU\n3'-UUU...GCUUA__________________U__________ACC______G___UUUAA_______ACUCA...GUG-5'\n_____________|______________________________________________________|\n_____________87_____________________________________________________38\n |
271 -- 277 |
39 -- 45 |
-47.4338 kcal/mol |
15.6024 kcal/mol |
16.9994 kcal/mol |
225 278@LB@ | |@LB@5'-GUG...UACCG CUGA C U GCCA CACG ACCCA...CGG-3'@LB@ GCUGCGCCAAC ACU GG GAAGUCU UUGCG CGU GUUAUGA@LB@ :|||||||||| ||: || |||:||| :|||| ||| :||||||@LB@ UGACGCGGUUG UGG CC CUUUAGA GACGC GCA UAAUACU@LB@3'-UUU...GCUUA U ACC G UUUAA ACUCA...GUG-5'@LB@ | |@LB@ 87 38@LB@@LB@@LB@Energy -14.83 kcal/mol@LB@Hybridization Energy -47.4338 kcal/mol@LB@Unfolding Energy - mRNA 15.6024 kcal/mol@LB@Unfolding Energy - sRNA 16.9994 kcal/mol@LB@@LB@Position - mRNA 226 -- 277@LB@Position - sRNA 39 -- 86@LB@Position Seed - mRNA 271 -- 277@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 37 |
0.002023 |
0.1727 |
b2197 |
ccmE |
-14.61 |
0.017549 |
166 -- 218 |
48 -- 94 |
periplasmic heme chaperone |
|
_____________165___________________________________________________________219\n_____________|_____________________________________________________________|\n5'-CCU...GUGAG_____UUUAC______________G____A_____________AUGAAUAUUC________AACCG...AUA-3'\n______________GCGCG_____GUGCUGCG_CAACA_CAGG________GGCUGC__________GCCGUAAA\n______________|||||_____:|:|||||_|||||_||||________||||||__________||||||||\n______________CGCGC_____UAUGACGC_GUUGU_GUCC________CCGACG__________CGGCAUUU\n3'-UUU...CCCCA_____U____________G_____G____CUUUAGAA________________________AAUAA...GUG-5'\n_____________|_____________________________________________________________|\n_____________95____________________________________________________________47\n |
212 -- 218 |
48 -- 54 |
-51.9512 kcal/mol |
20.0441 kcal/mol |
17.2978 kcal/mol |
165 219@LB@ | |@LB@5'-CCU...GUGAG UUUAC G A AUGAAUAUUC AACCG...AUA-3'@LB@ GCGCG GUGCUGCG CAACA CAGG GGCUGC GCCGUAAA@LB@ ||||| :|:||||| ||||| |||| |||||| ||||||||@LB@ CGCGC UAUGACGC GUUGU GUCC CCGACG CGGCAUUU@LB@3'-UUU...CCCCA U G G CUUUAGAA AAUAA...GUG-5'@LB@ | |@LB@ 95 47@LB@@LB@@LB@Energy -14.61 kcal/mol@LB@Hybridization Energy -51.9512 kcal/mol@LB@Unfolding Energy - mRNA 20.0441 kcal/mol@LB@Unfolding Energy - sRNA 17.2978 kcal/mol@LB@@LB@Position - mRNA 166 -- 218@LB@Position - sRNA 48 -- 94@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 48 -- 54@LB@ |
| 21 |
0.001192 |
0.1727 |
b2526 |
hscA |
-14.48 |
0.018641 |
235 -- 259 |
63 -- 88 |
DnaK-like molecular chaperone specific for IscU |
|
_____________234________________________260\n_____________|__________________________|\n5'-AGC...UUUGA__________________C_UC____GGCGG...UGG-3'\n______________GUGCUGCGCC_GCAUCAG_G__GUCU\n______________:|:|||||||_:||:|||_|__:|||\n______________UAUGACGCGG_UGUGGUC_C__UAGA\n3'-UUU...GCGCU__________U_______C_UU____ACCGA...GUG-5'\n_____________|__________________________|\n_____________89_________________________62\n |
245 -- 251 |
71 -- 77 |
-31.0682 kcal/mol |
9.20475 kcal/mol |
7.38674 kcal/mol |
234 260@LB@ | |@LB@5'-AGC...UUUGA C UC GGCGG...UGG-3'@LB@ GUGCUGCGCC GCAUCAG G GUCU@LB@ :|:||||||| :||:||| | :|||@LB@ UAUGACGCGG UGUGGUC C UAGA@LB@3'-UUU...GCGCU U C UU ACCGA...GUG-5'@LB@ | |@LB@ 89 62@LB@@LB@@LB@Energy -14.48 kcal/mol@LB@Hybridization Energy -31.0682 kcal/mol@LB@Unfolding Energy - mRNA 9.20475 kcal/mol@LB@Unfolding Energy - sRNA 7.38674 kcal/mol@LB@@LB@Position - mRNA 235 -- 259@LB@Position - sRNA 63 -- 88@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 56 |
0.002848 |
0.1727 |
b0797 |
rhlE |
-14.47 |
0.018687 |
57 -- 89 |
53 -- 82 |
ATP-dependent RNA helicase |
|
_____________56_________________________________90\n_____________|__________________________________|\n5'-GAU...AGCAA______U_________U_____A__C________ACAAA...CUG-3'\n______________CGCCAG_CA_CAGGGA_AAUUU_UG_GCUGCGUC\n______________|||||:_||_||||||_|||:|_||_||||||:|\n______________GCGGUU_GU_GUCCCU_UUAGA_AC_CGACGCGG\n3'-UUU...AUGAC_________G________________________CAUUU...GUG-5'\n_____________|__________________________________|\n_____________83_________________________________52\n |
83 -- 89 |
53 -- 59 |
-38.8186 kcal/mol |
7.89252 kcal/mol |
16.4547 kcal/mol |
56 90@LB@ | |@LB@5'-GAU...AGCAA U U A C ACAAA...CUG-3'@LB@ CGCCAG CA CAGGGA AAUUU UG GCUGCGUC@LB@ |||||: || |||||| |||:| || ||||||:|@LB@ GCGGUU GU GUCCCU UUAGA AC CGACGCGG@LB@3'-UUU...AUGAC G CAUUU...GUG-5'@LB@ | |@LB@ 83 52@LB@@LB@@LB@Energy -14.47 kcal/mol@LB@Hybridization Energy -38.8186 kcal/mol@LB@Unfolding Energy - mRNA 7.89252 kcal/mol@LB@Unfolding Energy - sRNA 16.4547 kcal/mol@LB@@LB@Position - mRNA 57 -- 89@LB@Position - sRNA 53 -- 82@LB@Position Seed - mRNA 83 -- 89@LB@Position Seed - sRNA 53 -- 59@LB@ |
