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CopraRNA 6527768

Input and runtime details for job 6527768 (precomputed example)

Sequence input

? sRNA sequences[.fa]
? Putative target sequences (organism of interest)[.fa]
? Extract sequences aroundstart codon
? nt up (1-300)200
? nt down (1-300)100

CopraRNA parameters

? Consensus prediction off
? p-value combinationno
? p-value filtering (0=off)0

IntaRNA parameters

? Target folding window size150
? Target max. basepair distance100

Job ID 6527768 (server version trunk)

?Job Submitted & Queued@ Fri Feb 16 15:24:51 CET 2018
?CopraRNA Started@ Fri Feb 16 15:25:20 CET 2018
?CopraRNA Finished & Post-Processing@ Fri Feb 16 20:38:58 CET 2018
?Post-Processing Finished@ Fri Feb 16 20:39:05 CET 2018
?Job Completed@ Fri Feb 16 20:39:38 CET 2018
 DIRECT ACCESS: http://rna.informatik.uni-freiburg.de/RetrieveResults.jsp?jobID=6527768&toolName=CopraRNA ( 30 days expiry )

Description of the job

MicA

Output download complete results [zip]

Downloadable files

[csv]
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heatmap

? Conserved, identified interactions for NC_000913 Escherichia coli str. K-12 substr. MG1655

Sort by selecting a column name:
Rank CopraRNA p-value CopraRNA fdr value Locus Tag Gene Name Energy [kcal/mol] IntaRNA p-value Position mRNA Position sRNA Annotation Additional homologs
28 0.001743 0.2094 b2308 hisQ -15.00 0.015715 1 -- 16 7 -- 21 histidine ABC transporter permease  
46 0.003408 0.2484 b2518 ndk -12.77 0.039848 1 -- 16 7 -- 21 multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'-phosphodiesterase  
105 0.01074 0.3104 b3791 wecE -13.91 0.024834 1 -- 12 7 -- 18 TDP-4-oxo-6-deoxy-D-glucose transaminase  
170 0.01687 0.3104 b0033 carB -11.35 0.071227 1 -- 15 5 -- 17 carbamoyl-phosphate synthase large subunit  
82 0.007621 0.3104 b3388 damX -7.48 0.304490 3 -- 13 8 -- 18 cell division protein that binds to the septal ring  
137 0.01327 0.3104 b3858 yihD -10.36 0.105347 5 -- 11 5 -- 11 DUF1040 protein YihD  
172 0.01719 0.3104 b0678 nagB -13.42 0.030481 5 -- 26 1 -- 17 glucosamine-6-phosphate deaminase  
179 0.01766 0.3104 b0377 sbmA -9.49 0.147268 6 -- 15 3 -- 12 peptide antibiotic transporter b1496
197 0.01929 0.3104 b2185 rplY -8.58 0.206984 8 -- 20 7 -- 19 50S ribosomal subunit protein L25  
116 0.01184 0.3104 b1218 chaC -12.45 0.045440 10 -- 29 8 -- 30 cation transport regulator  
76 0.007084 0.3087 b4214 cysQ -5.34 0.578728 11 -- 17 26 -- 32 3'(2') 5'-bisphosphate nucleotidase  
181 0.01793 0.3104 b1594 mlc -11.10 0.078496 11 -- 37 1 -- 18 glucosamine anaerobic growth regulon transcriptional repressor; autorepressor  
131 0.01264 0.3104 b3412 bioH -11.05 0.080071 12 -- 32 7 -- 31 pimeloyl-ACP methyl ester carboxylesterase  
79 0.007292 0.3087 b0063 araB -12.45 0.045578 14 -- 28 6 -- 20 L-ribulokinase  
168 0.01645 0.3104 b3720 bglH -8.64 0.202347 15 -- 28 9 -- 22 carbohydrate-specific outer membrane porin cryptic  
60 0.00555 0.3084 b2062 wza -10.85 0.086669 18 -- 25 4 -- 11 colanic acid export protein; outer membrane auxillary lipoprotein  
78 0.007118 0.3087 b1118 lolE -12.65 0.041861 19 -- 36 6 -- 21 lipoprotein-releasing system transmembrane protein  
166 0.01595 0.3104 b3560 glyQ -10.24 0.110293 22 -- 29 7 -- 14 glycine tRNA synthetase alpha subunit  
198 0.0193 0.3104 b2961 mutY -10.33 0.106403 22 -- 38 1 -- 15 adenine DNA glycosylase  
133 0.01287 0.3104 b3179 rlmE -8.60 0.205247 24 -- 43 1 -- 17 23S rRNA U2552 2'-O-ribose methyltransferase SAM-dependent  
159 0.01499 0.3104 b2476 purC -11.66 0.062723 28 -- 49 4 -- 22 phosphoribosylaminoimidazole-succinocarboxamide synthetase  
42 0.002847 0.2296 b1638 pdxH -9.07 0.172497 29 -- 35 5 -- 11 pyridoxine 5'-phosphate oxidase  
59 0.005538 0.3084 b2812 tcdA -16.71 0.007603 29 -- 48 1 -- 19 tRNA threonylcarbamoyladenosine dehydratase; sulfur acceptor for CsdA  
158 0.01496 0.3104 b4278 insG -10.00 0.121023 32 -- 48 3 -- 20 IS4 transposase  
55 0.005043 0.3024 b1625 cnu -10.91 0.084723 38 -- 57 1 -- 21 nucleoid-associated oriC-binding protein; H-NS and StpA stabilizing factor  
142 0.01346 0.3104 b0729 sucD -11.71 0.061414 39 -- 57 3 -- 21 succinyl-CoA synthetase NAD(P)-binding alpha subunit  
152 0.01445 0.3104 b0385 yaiC -12.21 0.050169 39 -- 67 12 -- 42 diguanylate cyclase cellulose regualtor  
22 0.001004 0.1545 b0583 entD -18.10 0.004183 41 -- 63 1 -- 22 phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex  
154 0.01456 0.3104 b2048 cpsG -9.02 0.175967 42 -- 71 4 -- 44 phosphomannomutase  
10 0.0002413 0.08171 b2594 rluD -15.70 0.011720 48 -- 64 5 -- 21 23S rRNA pseudouridine(1911 1915 1917) synthase  
177 0.01751 0.3104 b2900 yqfB -9.18 0.165418 52 -- 70 1 -- 17 UPF0267 family protein  
23 0.001384 0.1943 b0399 phoB -10.33 0.106753 53 -- 63 8 -- 18 response regulator in two-component regulatory system with PhoR  
2 9.051e-06 0.01532 b2745 truD -15.77 0.011349 54 -- 69 2 -- 17 tRNA(Glu) pseudouridine(13) synthase  
157 0.01467 0.3104 b0906 ycaP -12.44 0.045773 54 -- 69 5 -- 18 UPF0702 family putative inner membrane protein  
119 0.01215 0.3104 b3691 dgoT -8.17 0.239341 58 -- 68 8 -- 21 D-galactonate transporter  
1 0 0 b2687 luxS -86.29 0.000000 61 -- 132 1 -- 72 S-ribosylhomocysteine lyase  
143 0.01362 0.3104 b3284 smg -7.50 0.302399 64 -- 82 5 -- 21 DUF494 family putative periplasmic protein  
150 0.01436 0.3104 b3951 pflD -11.87 0.057659 67 -- 75 5 -- 13 putative glycine radical domain-containing pyruvate formate-lyase b0823
66 0.006019 0.3087 b0223 yafJ -7.05 0.351504 68 -- 78 1 -- 10 type 2 glutamine amidotransferase family protein  
86 0.008729 0.3104 b4213 cpdB -12.03 0.054140 68 -- 81 8 -- 21 2':3'-cyclic-nucleotide 2'-phosphodiesterase  
135 0.01297 0.3104 b3409 feoB -9.25 0.161231 74 -- 82 5 -- 13 ferrous iron transporter protein B and GTP-binding protein; membrane protein  
47 0.003448 0.2484 b0614 citX -10.13 0.115098 76 -- 91 4 -- 17 apo-citrate lyase phosphoribosyl-dephospho-CoA transferase  
200 0.0195 0.3104 b3183 obgE -7.01 0.355777 76 -- 83 4 -- 11 GTPase involved in cell partioning and DNA repair  
77 0.007102 0.3087 b0832 gsiD -8.78 0.192254 77 -- 85 7 -- 15 glutathione ABC transporter permease  
118 0.01199 0.3104 b2573 rpoE -10.72 0.091300 77 -- 87 8 -- 18 RNA polymerase sigma E factor  
147 0.01411 0.3104 b0441 ppiD -10.51 0.099467 81 -- 98 3 -- 21 periplasmic folding chaperone has an inactive PPIase domain  
64 0.005939 0.3087 b3237 argR -9.39 0.153279 85 -- 104 1 -- 19 l-arginine-responsive arginine metabolism regulon transcriptional regulator  
31 0.001974 0.2094 b1080 flgI -10.59 0.096403 87 -- 101 7 -- 21 putative flagellar basal body protein  
109 0.01118 0.3104 b3195 mlaF -11.81 0.058997 89 -- 105 1 -- 18 ABC transporter maintaining OM lipid asymmetry ATP-binding protein  
113 0.01159 0.3104 b1279 yciS -9.20 0.164515 90 -- 101 6 -- 18 DUF1049 family inner membrane protein function unknown  
45 0.00309 0.2325 b0584 fepA -13.78 0.026215 91 -- 106 1 -- 17 ferrienterobactin outer membrane transporter  
194 0.0191 0.3104 b2698 recX -10.17 0.113250 93 -- 107 8 -- 22 regulatory protein for RecA  
69 0.006491 0.3087 b3347 fkpA -11.66 0.062814 96 -- 113 4 -- 22 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)  
111 0.01125 0.3104 b0102 zapD -10.07 0.117779 99 -- 113 8 -- 22 FtsZ stabilizer  
5 7.362e-05 0.04801 b0741 pal -13.90 0.024968 103 -- 115 3 -- 16 peptidoglycan-associated outer membrane lipoprotein  
30 0.001906 0.2094 b0616 citE -12.56 0.043465 103 -- 116 8 -- 21 citrate lyase citryl-ACP lyase (beta) subunit  
155 0.0146 0.3104 b2614 grpE -10.46 0.101070 105 -- 125 1 -- 22 heat shock protein  
25 0.001519 0.1943 b2817 amiC -17.97 0.004427 110 -- 131 1 -- 21 N-acetylmuramoyl-L-alanine amidase  
192 0.01895 0.3104 b3333 gspL -4.89 0.645256 110 -- 132 1 -- 21 general secretory pathway component cryptic  
39 0.002561 0.2224 b3845 fadA -14.30 0.021162 112 -- 126 5 -- 20 3-ketoacyl-CoA thiolase (thiolase I)  
180 0.01774 0.3104 b0593 entC -14.03 0.023631 112 -- 128 4 -- 19 isochorismate synthase 1  
100 0.01004 0.3104 b3166 truB -9.42 0.151044 113 -- 128 5 -- 18 tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase  
53 0.004896 0.3024 b3790 wecD -9.15 0.167607 125 -- 139 7 -- 21 TDP-fucosamine acetyltransferase  
97 0.009805 0.3104 b1306 pspC -10.74 0.090670 128 -- 139 7 -- 18 psp operon transcription co-activator  
161 0.01501 0.3104 b1709 btuD -8.32 0.227073 129 -- 137 1 -- 9 vitamin B12 ABC transporter ATPase  
199 0.01944 0.3104 b3657 yicJ -13.22 0.033173 129 -- 161 8 -- 45 putative transporter  
9 0.000195 0.07335 b1830 prc -15.09 0.015143 131 -- 161 7 -- 38 carboxy-terminal protease for penicillin-binding protein 3  
185 0.01831 0.3104 b3164 pnp -7.42 0.310961 131 -- 137 8 -- 14 polynucleotide phosphorylase/polyadenylase  
112 0.01125 0.3104 b2515 ispG -10.24 0.110168 132 -- 140 4 -- 12 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase  
27 0.001549 0.1943 b0440 hupB -11.81 0.059023 134 -- 149 5 -- 20 HU DNA-binding transcriptional regulator beta subunit  
94 0.009498 0.3104 b4198 ulaF -10.74 0.090813 136 -- 150 6 -- 20 L-ribulose 5-phosphate 4-epimerase  
114 0.01161 0.3104 b3392 hofP -8.60 0.204995 138 -- 147 1 -- 11 DNA catabolic protein  
164 0.0157 0.3104 b1735 chbR -6.99 0.357617 139 -- 145 6 -- 12 repressor of chb operon for N N'-diacetylchitobiose utilization  
141 0.01345 0.3104 b3311 rpsQ -8.13 0.242987 140 -- 150 8 -- 18 30S ribosomal subunit protein S17  
62 0.005646 0.3084 b1242 ychE -13.92 0.024785 141 -- 151 1 -- 11 UPF0056 family inner membrane protein  
129 0.01261 0.3104 b3025 qseB -10.92 0.084347 141 -- 152 5 -- 17 quorum sensing DNA-binding response regulator in two-component regulatory system with QseC  
44 0.003062 0.2325 b3847 pepQ -9.98 0.122201 144 -- 157 8 -- 21 proline dipeptidase  
34 0.002145 0.2094 b1939 fliG -13.29 0.032191 145 -- 162 6 -- 22 flagellar motor switching and energizing component  
91 0.009339 0.3104 b2562 yfhL -11.62 0.063873 146 -- 160 6 -- 20 putative 4Fe-4S cluster-containing protein  
175 0.01743 0.3104 b0921 smtA -12.81 0.039244 146 -- 164 2 -- 20 putative S-adenosyl-L-methionine-dependent methyltransferase  
13 0.0003435 0.08948 b2551 glyA -14.51 0.019315 147 -- 213 7 -- 69 serine hydroxymethyltransferase  
56 0.005155 0.3024 b3091 uxaA -13.05 0.035558 147 -- 159 6 -- 19 altronate hydrolase  
57 0.005155 0.3024 b3091 uxaA -13.05 0.035558 147 -- 159 6 -- 19 altronate hydrolase  
127 0.01249 0.3104 b2964 nupG -12.57 0.043346 150 -- 164 1 -- 16 nucleoside transporter b2406
196 0.01921 0.3104 b2167 fruA -9.92 0.125082 150 -- 163 5 -- 22 fused fructose-specific PTS enzymes: IIBcomponent/IIC components  
43 0.003009 0.2325 b3429 glgA -8.59 0.206361 152 -- 163 7 -- 22 glycogen synthase  
146 0.01406 0.3104 b3831 udp -7.35 0.318150 153 -- 161 1 -- 9 uridine phosphorylase  
4 4.059e-05 0.03436 b2748 ftsB -19.92 0.001892 154 -- 190 1 -- 44 cell division protein  
186 0.01836 0.3104 b3521 yhjC -9.62 0.140197 158 -- 166 5 -- 13 LysR family putative transcriptional regulator  
98 0.009835 0.3104 b1213 ychQ -13.77 0.026325 164 -- 179 6 -- 23 SIRB family inner membrane protein  
160 0.015 0.3104 b2022 hisB -11.12 0.077869 165 -- 171 5 -- 11 histidinol-phosphatase and imidazoleglycerol-phosphate dehydratase  
48 0.00405 0.2857 b0409 secF -13.37 0.031213 166 -- 172 5 -- 11 SecYEG protein translocase auxillary subunit  
163 0.0151 0.3104 b1517 lsrF -8.60 0.205199 166 -- 179 8 -- 21 putative autoinducer-2 (AI-2) aldolase  
65 0.005951 0.3087 b0064 araC -16.15 0.009664 167 -- 213 8 -- 48 ara regulon transcriptional activator; autorepressor  
107 0.01107 0.3104 b0723 sdhA -7.08 0.348281 169 -- 200 7 -- 42 succinate dehydrogenase flavoprotein subunit  
110 0.01118 0.3104 b1726 yniB -10.98 0.082506 169 -- 185 3 -- 23 putative inner membrane protein  
61 0.005608 0.3084 b2174 lpxT -9.09 0.171357 170 -- 179 1 -- 10 lipid A 1-diphosphate synthase; undecaprenyl pyrophosphate:lipid A 1-phosphate phosphotransferase  
21 0.0009524 0.1536 b0241 phoE -11.39 0.070016 174 -- 180 5 -- 11 outer membrane phosphoporin protein E b0929 b2215 b1377
144 0.01383 0.3104 b1135 rluE -11.03 0.080673 174 -- 189 5 -- 20 23S rRNA pseudouridine(2457) synthase  
173 0.0173 0.3104 b0145 dksA -10.49 0.099910 175 -- 187 5 -- 21 transcriptional regulator of rRNA transcription; DnaK suppressor protein  
93 0.009444 0.3104 b3822 recQ -7.42 0.310549 176 -- 212 9 -- 45 ATP-dependent DNA helicase  
90 0.009145 0.3104 b1079 flgH -6.81 0.379144 179 -- 204 10 -- 38 flagellar protein of basal-body outer-membrane L ring  
182 0.01795 0.3104 b0403 malZ -8.22 0.235274 180 -- 211 10 -- 46 maltodextrin glucosidase  
85 0.008151 0.3104 b0914 msbA -12.09 0.052799 181 -- 198 1 -- 18 lipid ABC transporter permease/ATPase  
16 0.0004819 0.102 b0957 ompA -13.00 0.036257 182 -- 195 8 -- 22 outer membrane protein A (3a;II*;G;d)  
7 9.926e-05 0.04801 b1113 ldtC -15.69 0.011765 184 -- 223 1 -- 45 L D-transpeptidase linking Lpp to murein  
6 9.655e-05 0.04801 b4175 hflC -9.47 0.148653 186 -- 211 5 -- 32 HflB protease modulator specific for phage lambda cII repressor  
19 0.0006629 0.1181 b2909 ygfB -11.13 0.077732 186 -- 206 4 -- 22 UPF0149 family protein  
52 0.004683 0.3024 b1130 phoP -12.79 0.039529 186 -- 208 6 -- 31 response regulator in two-component regulatory system with PhoQ  
35 0.002165 0.2094 b2714 ascG -14.61 0.018547 188 -- 213 10 -- 30 asc operon transcriptional repressor; prpBC operon repressor  
12 0.0003263 0.08948 b4036 lamB -12.21 0.050157 189 -- 218 8 -- 32 maltose outer membrane porin (maltoporin)  
123 0.01235 0.3104 b0097 secM -7.65 0.286972 189 -- 203 7 -- 21 regulator of secA translation  
151 0.01442 0.3104 b1395 paaH -15.43 0.013105 189 -- 216 8 -- 31 3-hydroxyadipyl-CoA dehydrogenase NAD+-dependent  
72 0.006739 0.3087 b2520 yfhM -8.19 0.237735 190 -- 217 6 -- 30 bacterial alpha2-macroglobulin colonization factor ECAM; anti-host protease defense factor; periplasmic inner membrane-anchored lipoprotein  
75 0.006972 0.3087 b4348 hsdS -13.63 0.027959 190 -- 211 7 -- 29 specificity determinant for hsdM and hsdR  
125 0.01241 0.3104 b0002 thrA -8.21 0.235915 191 -- 205 9 -- 21 Bifunctional aspartokinase/homoserine dehydrogenase 1  
24 0.001508 0.1943 b0150 fhuA -11.07 0.079438 192 -- 210 5 -- 21 ferrichrome outer membrane transporter  
38 0.002512 0.2224 b0436 tig -7.88 0.265562 192 -- 204 10 -- 21 peptidyl-prolyl cis/trans isomerase (trigger factor)  
167 0.01599 0.3104 b4220 tamA -9.57 0.142740 193 -- 207 4 -- 21 translocation and assembly module for autotransporter export outer membrane subunit  
14 0.0004057 0.09812 b0886 cydC -15.95 0.010534 194 -- 211 2 -- 21 glutathione/cysteine ABC transporter export permease/ATPase  
15 0.000461 0.102 b2140 dusC -12.07 0.053129 194 -- 211 3 -- 22 tRNA-dihydrouridine synthase C  
70 0.006501 0.3087 b3301 rplO -9.96 0.122936 194 -- 206 8 -- 20 50S ribosomal subunit protein L15  
193 0.01896 0.3104 b3181 greA -10.36 0.105339 194 -- 204 10 -- 20 transcript cleavage factor  
51 0.004574 0.3024 b3529 yhjK -9.99 0.121635 195 -- 213 1 -- 18 cyclic-di-GMP phosphodiesterase  
103 0.01026 0.3104 b1083 flgL -8.46 0.215699 195 -- 209 5 -- 21 flagellar hook-filament junction protein  
74 0.006875 0.3087 b2474 tmcA -10.30 0.108021 196 -- 222 5 -- 31 elongator methionine tRNA (ac4C34) acetyltransferase  
156 0.01464 0.3104 b4105 phnD -8.45 0.216438 196 -- 209 4 -- 18 phosphonate ABC transporter periplasmic binding protein  
195 0.01912 0.3104 b3910 yiiM -10.43 0.102344 196 -- 205 9 -- 18 6-N-hydroxylaminopurine resistance protein  
169 0.01667 0.3104 b3575 yiaK -9.90 0.125874 198 -- 219 8 -- 29 2 3-diketo-L-gulonate reductase NADH-dependent  
29 0.001844 0.2094 b2047 wcaJ -13.26 0.032615 200 -- 222 7 -- 21 colanic biosynthesis UDP-glucose lipid carrier transferase  
80 0.007305 0.3087 b2392 mntH -9.52 0.145914 200 -- 218 5 -- 21 manganese/divalent cation transporter  
33 0.002096 0.2094 b0937 ssuE -11.36 0.070700 201 -- 209 5 -- 13 NAD(P)H-dependent FMN reductase  
88 0.008928 0.3104 b0405 queA -8.89 0.184414 201 -- 209 5 -- 13 S-adenosylmethionine:tRNA ribosyltransferase-isomerase  
140 0.01344 0.3104 b2388 glk -4.25 0.738023 201 -- 214 10 -- 20 glucokinase  
190 0.01867 0.3104 b0196 rcsF -10.27 0.109081 201 -- 211 2 -- 13 putative outer membrane protein  
8 0.000167 0.07068 b0814 ompX -11.11 0.078421 202 -- 223 1 -- 22 outer membrane protein X  
145 0.01404 0.3104 b0721 sdhC -10.79 0.088833 202 -- 215 9 -- 22 succinate dehydrogenase membrane subunit binds cytochrome b556  
176 0.01748 0.3104 b0435 bolA -9.78 0.131850 202 -- 220 4 -- 22 stationary-phase morphogene transcriptional repressor for mreB; also regulator for dacA dacC and ampC  
41 0.00276 0.2279 b0889 lrp -10.49 0.100208 207 -- 221 8 -- 21 leucine-responsive global transcriptional regulator  
126 0.01241 0.3104 b4379 yjjW -11.82 0.058804 207 -- 217 8 -- 18 putative pyruvate formate lyase activating enzyme  
26 0.001545 0.1943 b1678 ldtE -10.42 0.102915 208 -- 217 2 -- 11 murein L D-transpeptidase  
54 0.004897 0.3024 b1949 fliQ -8.93 0.181731 208 -- 239 7 -- 38 flagellar biosynthesis protein  
83 0.007683 0.3104 b4244 pyrI -7.62 0.290375 210 -- 222 10 -- 21 aspartate carbamoyltransferase regulatory subunit  
67 0.006163 0.3087 b0773 ybhB -10.36 0.105479 214 -- 228 7 -- 20 kinase inhibitor homolog UPF0098 family b0545
134 0.01294 0.3104 b2234 nrdA -13.57 0.028625 217 -- 231 7 -- 22 ribonucleoside-diphosphate reductase 1 alpha subunit  
115 0.01182 0.3104 b3367 nirC -10.39 0.104055 218 -- 233 4 -- 19 nitrite transporter  
178 0.01756 0.3104 b2017 yefM -12.99 0.036476 219 -- 231 5 -- 18 antitoxin of the YoeB-YefM toxin-antitoxin system  
20 0.0008552 0.1448 b4137 cutA -9.23 0.162618 220 -- 236 1 -- 16 divalent-cation tolerance protein copper sensitivity  
81 0.007385 0.3087 b0736 ybgC -11.71 0.061637 220 -- 237 4 -- 21 acyl-CoA thioester hydrolase  
87 0.008927 0.3104 b0195 tsaA -8.24 0.234029 220 -- 237 1 -- 18 tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase SAM-dependent  
184 0.01824 0.3104 b2055 wcaE -6.17 0.461247 221 -- 230 4 -- 12 putative glycosyl transferase  
96 0.009671 0.3104 b0941 elfG -12.70 0.041082 222 -- 232 5 -- 15 putative fimbrial-like adhesin protein b3145 b0533
187 0.01837 0.3104 b2151 galS -10.59 0.096282 222 -- 228 5 -- 11 galactose- and fucose-inducible galactose regulon transcriptional isorepressor; mgl operon transcriptional repressor; autorepressor  
40 0.002726 0.2279 b1799 dmlR -13.48 0.029707 223 -- 239 2 -- 20 transcriptional activator of dmlA b3060
120 0.01222 0.3104 b0916 ycaQ -9.32 0.156865 225 -- 243 1 -- 17 DUF1006 family protein with C-terminal wHTH domain  
121 0.01226 0.3104 b3209 elbB -12.57 0.043302 225 -- 240 4 -- 18 isoprenoid biosynthesis protein with amidotransferase-like domain  
3 3.559e-05 0.03436 b0168 map -14.62 0.018437 228 -- 248 5 -- 21 methionine aminopeptidase  
58 0.00518 0.3024 b4068 yjcH -12.19 0.050580 228 -- 240 8 -- 21 DUF485 family inner membrane protein  
162 0.01506 0.3104 b0871 poxB -6.02 0.481603 228 -- 255 23 -- 53 pyruvate dehydrogenase thiamine triphosphate-binding FAD-binding  
130 0.01263 0.3104 b1952 dsrB -7.17 0.338083 230 -- 240 7 -- 18 uncharacterized protein  
165 0.01591 0.3104 b4393 trpR -12.13 0.051953 230 -- 246 5 -- 21 transcriptional repressor tryptophan-binding  
99 0.009943 0.3104 b3405 ompR -10.46 0.101388 231 -- 245 8 -- 21 response regulator in two-component regulatory system with EnvZ  
117 0.01191 0.3104 b2137 yohF -11.08 0.079147 231 -- 259 5 -- 35 putative oxidoreductase  
171 0.01687 0.3104 b1512 lsrR -11.43 0.068975 231 -- 262 7 -- 31 lsr operon transcriptional repressor b4295
68 0.006348 0.3087 b1202 ycgV -6.40 0.429936 233 -- 244 4 -- 18 putative adhesin b2647
153 0.0145 0.3104 b3866 yihI -12.31 0.048207 234 -- 252 5 -- 21 activator of Der GTPase  
18 0.00061 0.1147 b2126 yehU -11.17 0.076396 235 -- 252 1 -- 18 inner membrane putative sensory kinase in two-component system with YehT  
36 0.002407 0.2206 b2550 yphH -13.17 0.033778 238 -- 251 7 -- 20 putative DNA-binding transcriptional regulator  
183 0.01807 0.3104 b1508 hipB -7.23 0.331427 238 -- 247 10 -- 19 antitoxin of HipAB toxin-antitoxin system b1299 b1434
89 0.009028 0.3104 b0529 folD -8.62 0.203566 239 -- 251 4 -- 17 bifunctional 5 10-methylene-tetrahydrofolate dehydrogenase/ 5 10-methylene-tetrahydrofolate cyclohydrolase  
50 0.004415 0.299 b0752 zitB -14.03 0.023662 243 -- 258 5 -- 21 zinc efflux system  
106 0.0109 0.3104 b2510 yfgJ -10.53 0.098521 243 -- 261 5 -- 21 DUF1407 family protein  
132 0.01286 0.3104 b3176 glmM -8.35 0.224806 246 -- 258 8 -- 20 phosphoglucosamine mutase  
122 0.01233 0.3104 b3599 mtlA -8.56 0.208645 247 -- 281 4 -- 32 mannitol-specific PTS enzyme: IIA IIB and IIC components  
101 0.01005 0.3104 b3288 fmt -10.27 0.109217 249 -- 255 5 -- 11 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase  
124 0.0124 0.3104 b1860 ruvB -8.20 0.236824 252 -- 265 8 -- 20 ATP-dependent DNA helicase component of RuvABC resolvasome  
71 0.006638 0.3087 b3857 mobA -12.61 0.042607 253 -- 264 7 -- 18 molybdopterin-guanine dinucleotide synthase  
189 0.01853 0.3104 b3743 asnC -7.74 0.278830 255 -- 266 5 -- 18 transcriptional activator of asnA; autorepressor  
95 0.009629 0.3104 b0781 moaA -11.57 0.065137 257 -- 279 1 -- 21 molybdopterin biosynthesis protein A  
149 0.01422 0.3104 b0415 ribE -7.20 0.333957 258 -- 265 4 -- 11 riboflavin synthase beta chain  
49 0.004401 0.299 b0093 ftsQ -10.19 0.112476 259 -- 274 4 -- 20 divisome assembly protein membrane anchored protein involved in growth of wall at septum  
138 0.01331 0.3104 b2897 sdhE -11.73 0.060976 261 -- 284 1 -- 21 flavinator of succinate dehydrogenase; antitoxin of CptAB toxin-antitoxin pair  
92 0.009361 0.3104 b3652 recG -7.88 0.265686 265 -- 278 7 -- 20 ATP-dependent DNA helicase  
32 0.001981 0.2094 b3110 yhaO -10.61 0.095420 268 -- 283 7 -- 23 putative transporter  
174 0.01734 0.3104 b3470 tusA -9.03 0.174990 268 -- 281 8 -- 22 mnm(5)-s(2)U34-tRNA 2-thiolation sulfurtransferase  
128 0.01258 0.3104 b0677 nagA -7.18 0.336330 272 -- 297 1 -- 22 N-acetylglucosamine-6-phosphate deacetylase  
104 0.01032 0.3104 b1714 pheS -13.82 0.025875 273 -- 287 5 -- 21 phenylalanine tRNA synthetase alpha subunit  
136 0.01311 0.3104 b0694 kdpE -14.36 0.020608 275 -- 287 2 -- 14 response regulator in two-component regulatory system with KdpD  
73 0.006809 0.3087 b4146 epmB -12.79 0.039583 278 -- 298 1 -- 22 EF-P-Lys34 lysylation protein; weak lysine 2 3-aminomutase  
84 0.008129 0.3104 b2579 grcA -9.71 0.135356 279 -- 291 5 -- 18 autonomous glycyl radical cofactor  
191 0.01886 0.3104 b3494 uspB -6.32 0.440313 280 -- 286 5 -- 11 universal stress (ethanol tolerance) protein B  
17 0.0005644 0.1124 b0949 uup -13.14 0.034258 282 -- 297 4 -- 21 replication regulatory ABC-F family DNA-binding ATPase  
188 0.0185 0.3104 b3364 tsgA -7.52 0.300608 282 -- 299 12 -- 29 putative transporter  
11 0.0003246 0.08948 b2299 yfcD -11.11 0.078371 283 -- 295 5 -- 18 putative NUDIX hydrolase  
102 0.01008 0.3104 b3500 gor -8.16 0.240292 285 -- 295 4 -- 15 glutathione oxidoreductase  
37 0.00241 0.2206 b2455 eutE -11.61 0.064061 286 -- 298 3 -- 15 aldehyde oxidoreductase ethanolamine utilization protein  
139 0.01337 0.3104 b1255 yciC -11.25 0.074167 287 -- 299 1 -- 13 UPF0259 family inner membrane protein  
63 0.0059 0.3087 b3834 ubiJ -8.76 0.193647 289 -- 295 4 -- 10 aerobic ubiquinone synthesis protein SCP2 family protein  
148 0.01421 0.3104 b2379 alaC -8.54 0.209762 290 -- 297 5 -- 12 glutamate-pyruvate aminotransferase; glutamic-pyruvic transaminase (GPT); alanine transaminase  
108 0.01118 0.3104 b2565 recO -9.71 0.135448 294 -- 300 5 -- 11 gap repair protein  

Details of Selected Interaction Download Interaction Details 

mRNA

sRNA


		

		

		

		
		

			

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
			

			

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
			

		
 
		
		

		
		

		
		
		
		
Evolutionary conservation of mRNA targets
			(alignment generated with
			Jalview)

		
		
		
Evolutionary conservation of sRNA
			(alignment generated with
			Jalview)

		
		
		

		
	

	
	
	

	
	
	




			 
	





	
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Results are computed with CopraRNA version 2.1.2



		 
	

			





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