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CopraRNA 1786318

Input and runtime details for job 1786318 (precomputed example)

Sequence input

? sRNA sequences[.fa]
? Putative target sequences (organism of interest)[.fa]
? Extract sequences aroundstart codon
? nt up (1-300)200
? nt down (1-300)100

CopraRNA parameters

? Consensus prediction off
? p-value combinationno
? p-value filtering (0=off)0

IntaRNA parameters

? Target folding window size150
? Target max. basepair distance100

Job ID 1786318 (server version trunk)

?Job Submitted & Queued@ Fri Feb 16 15:20:27 CET 2018
?CopraRNA Started@ Fri Feb 16 15:20:56 CET 2018
?CopraRNA Finished & Post-Processing@ Fri Feb 16 22:01:46 CET 2018
?Post-Processing Finished@ Fri Feb 16 22:01:53 CET 2018
?Job Completed@ Fri Feb 16 22:02:22 CET 2018
 DIRECT ACCESS: http://rna.informatik.uni-freiburg.de/RetrieveResults.jsp?jobID=1786318&toolName=CopraRNA ( 30 days expiry )

Description of the job

ArcZ

Output download complete results [zip]

Downloadable files

[csv]
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[csv]
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heatmap

? Conserved, identified interactions for NC_000913 Escherichia coli str. K-12 substr. MG1655

Sort by selecting a column name:
Rank CopraRNA p-value CopraRNA fdr value Locus Tag Gene Name Energy [kcal/mol] IntaRNA p-value Position mRNA Position sRNA Annotation Additional homologs
105 0.005654 0.1855 b0004 thrC -10.56 0.108775 227 -- 299 1 -- 79 L-threonine synthase  
79 0.004357 0.1855 b0008 talB -10.61 0.106795 240 -- 280 50 -- 88 transaldolase B  
33 0.001709 0.1727 b0023 rpsT -12.95 0.037339 65 -- 78 72 -- 85 30S ribosomal subunit protein S20  
45 0.002234 0.1727 b0055 djlA -13.22 0.033048 207 -- 250 35 -- 76 membrane-anchored DnaK co-chaperone DNA-binding protein  
145 0.008374 0.2033 b0068 thiB -7.61 0.367750 229 -- 244 73 -- 87 thiamine/thiamine pyrophosphate/thiamine monophosphate ABC transporter periplasmic binding protein  
147 0.008705 0.2059 b0071 leuD -8.42 0.269085 76 -- 114 1 -- 54 3-isopropylmalate dehydratase small subunit  
42 0.002147 0.1727 b0082 rsmH -13.18 0.033634 23 -- 49 70 -- 94 16S rRNA m(4)C1402 methyltransferase SAM-dependent  
93 0.005014 0.1855 b0091 murC -15.25 0.013117 8 -- 30 73 -- 94 UDP-N-acetylmuramate:L-alanine ligase  
135 0.007679 0.1993 b0096 lpxC -11.14 0.084212 289 -- 298 76 -- 85 UDP-3-O-acyl N-acetylglucosamine deacetylase  
61 0.003042 0.1727 b0104 guaC -6.79 0.490983 117 -- 124 52 -- 59 GMP reductase  
199 0.0124 0.2193 b0128 yadH -9.95 0.142385 61 -- 79 68 -- 88 putative ABC transporter permease  
63 0.003148 0.1727 b0131 panD -12.33 0.049519 276 -- 291 70 -- 84 aspartate 1-decarboxylase  
110 0.005921 0.1855 b0156 erpA -16.74 0.006653 106 -- 166 29 -- 94 iron-sulfur cluster insertion protein  
118 0.006444 0.1913 b0189 rof -9.63 0.163299 226 -- 241 29 -- 45 modulator of Rho-dependent transcription termination  
139 0.008022 0.2031 b0311 betA -9.91 0.144745 36 -- 54 64 -- 80 choline dehydrogenase a flavoprotein  
182 0.01083 0.2089 b0314 betT -9.44 0.176432 217 -- 228 66 -- 77 choline transporter of high affinity  
76 0.003978 0.182 b0336 codB -6.71 0.504284 39 -- 48 1 -- 11 cytosine transporter  
167 0.009922 0.2071 b0367 tauC -5.98 0.628340 152 -- 162 85 -- 95 taurine ABC transporter permease  
72 0.00375 0.1804 b0386 proC -10.69 0.102749 216 -- 233 53 -- 70 pyrroline-5-carboxylate reductase NAD(P)-binding  
66 0.003275 0.1727 b0394 mak -8.12 0.303293 18 -- 92 5 -- 77 manno(fructo)kinase  
114 0.006011 0.1855 b0422 xseB -10.73 0.101337 104 -- 119 73 -- 87 exonuclease VII small subunit  
24 0.001457 0.1727 b0424 yajL -16.26 0.008266 79 -- 97 64 -- 86 oxidative-stress-resistance chaperone  
200 0.01246 0.2193 b0425 panE -12.07 0.055655 285 -- 293 54 -- 62 2-dehydropantoate reductase NADPH-specific  
58 0.002925 0.1727 b0427 yajR -11.14 0.084219 218 -- 238 54 -- 78 putative transporter  
150 0.008837 0.2059 b0453 ybaY -11.57 0.069675 268 -- 294 71 -- 94 outer membrane lipoprotein  
87 0.004792 0.1855 b0476 aes -9.71 0.157345 34 -- 55 56 -- 76 acetyl esterase  
197 0.01211 0.2164 b0495 ybbA -7.53 0.379415 88 -- 97 1 -- 10 putative ABC transporter ATPase  
84 0.004676 0.1855 b0526 cysS -14.43 0.019007 256 -- 269 64 -- 77 cysteinyl-tRNA synthetase  
17 0.0008046 0.1666 b0590 fepD -14.87 0.015550 17 -- 43 70 -- 94 ferrienterobactin ABC transporter permease  
28 0.001577 0.1727 b0598 cstA -11.00 0.089647 31 -- 48 28 -- 45 carbon starvation protein involved in peptide utilization; APC peptide transporter family protein  
122 0.006658 0.1913 b0600 ybdL -10.23 0.125775 275 -- 297 68 -- 86 methionine aminotransferase PLP-dependent  
75 0.003854 0.1809 b0606 ahpF -8.17 0.297536 59 -- 82 64 -- 85 alkyl hydroperoxide reductase F52a subunit FAD/NAD(P)-binding  
102 0.005508 0.1855 b0659 ybeY -7.73 0.351978 30 -- 54 64 -- 89 ssRNA-specific endoribonuclease; 16S rRNA 3' end maturation and quality control co-endoribonuclease working with RNase R; rRNA transcription antitermination factor  
185 0.01108 0.2089 b0662 ubiF -8.33 0.279302 272 -- 292 6 -- 27 2-octaprenyl-3-methyl-6-methoxy-1 4-benzoquinol oxygenase  
128 0.007127 0.1961 b0696 kdpC -9.30 0.187437 90 -- 106 44 -- 60 potassium translocating ATPase subunit C  
5 5.466e-05 0.03849 b0713 ybgL -10.83 0.096857 234 -- 242 53 -- 61 UPF0271 family protein  
67 0.003373 0.1727 b0723 sdhA -10.29 0.122560 175 -- 204 36 -- 70 succinate dehydrogenase flavoprotein subunit  
168 0.009959 0.2071 b0727 sucB -11.51 0.071542 30 -- 47 72 -- 88 dihydrolipoyltranssuccinase  
195 0.01197 0.2159 b0738 tolR -7.83 0.338188 180 -- 193 26 -- 40 membrane spanning protein in TolA-TolQ-TolR complex  
99 0.005465 0.1855 b0767 pgl -9.37 0.182441 275 -- 291 70 -- 86 6-phosphogluconolactonase  
22 0.001393 0.1727 b0794 ybhF -14.07 0.022426 148 -- 164 67 -- 84 putative ABC transporter ATPase  
56 0.002848 0.1727 b0797 rhlE -14.47 0.018687 57 -- 89 53 -- 82 ATP-dependent RNA helicase  
187 0.01114 0.2089 b0801 ybiC -12.72 0.041489 266 -- 279 27 -- 40 putative dehydrogenase b0517
120 0.006631 0.1913 b0825 fsaA -14.24 0.020734 15 -- 76 31 -- 86 fructose-6-phosphate aldolase 1 b3946
26 0.001553 0.1727 b0853 ybjN -8.94 0.217650 161 -- 169 52 -- 60 negative regulator of motility; multicopy suppressor of coaA(Ts)  
106 0.005731 0.1855 b0867 amiD -15.82 0.010089 39 -- 60 64 -- 86 1 6-anhydro-N-acetylmuramyl-L-alanine amidase Zn-dependent; OM lipoprotein  
96 0.005105 0.1855 b0870 ltaE -12.99 0.036706 93 -- 116 68 -- 88 L-allo-threonine aldolase PLP-dependent  
123 0.00672 0.1913 b0882 clpA -10.14 0.130927 50 -- 58 66 -- 74 ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease chaperone activity  
174 0.01024 0.2071 b0889 lrp -11.01 0.089440 79 -- 112 38 -- 78 leucine-responsive global transcriptional regulator  
183 0.011 0.2089 b0906 ycaP -11.77 0.063722 48 -- 74 48 -- 75 UPF0702 family putative inner membrane protein  
176 0.01044 0.208 b0933 ssuB -9.69 0.158756 203 -- 226 69 -- 90 aliphatic sulfonate ABC transporter ATPase  
111 0.005938 0.1855 b0962 helD -11.18 0.082726 7 -- 19 71 -- 82 DNA helicase IV  
184 0.01102 0.2089 b1033 ghrA -10.56 0.108938 6 -- 15 64 -- 73 glyoxylate/hydroxypyruvate reductase A  
9 0.0003241 0.1198 b1110 ycfJ -9.50 0.172514 224 -- 251 52 -- 76 uncharacterized protein  
101 0.005473 0.1855 b1129 phoQ -8.66 0.244665 211 -- 219 79 -- 87 sensory histidine kinase in two-component regulatory system with PhoP  
38 0.002093 0.1727 b1174 minE -11.55 0.070176 37 -- 55 69 -- 87 cell division topological specificity factor  
23 0.001421 0.1727 b1234 rssA -12.55 0.044848 179 -- 192 61 -- 74 putative patatin-like family phospholipase  
198 0.01217 0.2164 b1236 galU -11.62 0.068156 187 -- 208 56 -- 74 glucose-1-phosphate uridylyltransferase  
8 0.000265 0.1166 b1244 oppB -12.83 0.039495 280 -- 295 70 -- 84 oligopeptide ABC transporter permease  
116 0.006112 0.1855 b1260 trpA -12.39 0.048115 172 -- 199 63 -- 89 tryptophan synthase alpha subunit  
166 0.009748 0.2068 b1261 trpB -12.89 0.038353 88 -- 97 52 -- 61 tryptophan synthase beta subunit  
151 0.008943 0.2059 b1284 yciT -9.40 0.179701 94 -- 109 63 -- 77 global regulator of transcription; DeoR family  
179 0.01058 0.208 b1325 ycjG -11.81 0.062523 258 -- 297 32 -- 77 L-Ala-D/L-Glu epimerase  
161 0.009429 0.2062 b1372 stfR -7.17 0.431291 283 -- 297 69 -- 83 Rac prophage; putative tail fiber protein b1547
172 0.0102 0.2071 b1383 ydbL -9.96 0.141752 21 -- 31 52 -- 62 DUF1318 family protein  
152 0.009044 0.2059 b1448 mnaT -7.00 0.457084 229 -- 266 50 -- 86 methionine N-acyltransferase; L-amino acid N-acyltransferase  
165 0.009721 0.2068 b1475 fdnH -11.62 0.068172 63 -- 98 41 -- 76 formate dehydrogenase-N Fe-S (beta) subunit nitrate-inducible  
104 0.005642 0.1855 b1476 fdnI -8.74 0.236866 280 -- 291 51 -- 62 formate dehydrogenase-N cytochrome B556 (gamma) subunit nitrate-inducible  
47 0.002359 0.1727 b1520 yneE -16.33 0.007995 225 -- 237 50 -- 62 bestrophin family putative inner membrane protein  
155 0.009115 0.2059 b1531 marA -9.94 0.142609 213 -- 231 72 -- 89 multiple antibiotic resistance transcriptional regulator  
83 0.004611 0.1855 b1593 ynfK -13.15 0.034145 276 -- 295 66 -- 83 putative dethiobiotin synthetase  
130 0.007275 0.1966 b1638 pdxH -11.04 0.087983 237 -- 249 47 -- 59 pyridoxine 5'-phosphate oxidase  
27 0.001577 0.1727 b1679 sufE -9.94 0.142549 247 -- 262 68 -- 86 sulfur acceptor protein  
181 0.0108 0.2089 b1683 sufB -11.33 0.077347 153 -- 175 52 -- 74 component of SufBCD Fe-S cluster assembly scaffold  
13 0.0004745 0.1198 b1688 ydiK -12.82 0.039628 213 -- 226 68 -- 82 UPF0118 family inner membrane protein  
196 0.01202 0.2159 b1729 ydjN -13.87 0.024594 143 -- 155 72 -- 84 putative transporter  
148 0.008708 0.2059 b1754 ynjB -13.35 0.031185 160 -- 171 50 -- 61 putative ABC transporter periplasmic binding protein  
20 0.001165 0.1727 b1763 topB -8.06 0.310309 3 -- 10 34 -- 41 DNA topoisomerase III  
113 0.005997 0.1855 b1765 ydjA -10.36 0.119141 118 -- 144 49 -- 76 putative oxidoreductase  
117 0.006292 0.1893 b1769 ydjE -12.05 0.056060 116 -- 139 36 -- 59 putative MFS sugar transporter membrane protein b1775
121 0.006643 0.1913 b1813 nudL -11.92 0.059353 114 -- 132 70 -- 86 putative CoA pyrophosphohydrolase weak 3-phosphohydroxypyruvate phosphatase  
112 0.005982 0.1855 b1820 yobD -7.30 0.411799 229 -- 243 1 -- 14 UPF0266 family inner membrane protein  
175 0.01031 0.2074 b1834 yebT -10.32 0.121003 270 -- 282 51 -- 62 MCE domain protein  
35 0.001921 0.1727 b1849 purT -12.35 0.048961 166 -- 192 67 -- 88 phosphoribosylglycinamide formyltransferase 2  
44 0.002208 0.1727 b1859 znuB -7.63 0.365449 19 -- 38 72 -- 88 zinc ABC transporter permease  
7 0.0001601 0.08054 b1864 yebC -15.40 0.012230 213 -- 249 54 -- 89 UPF0082 family protein  
50 0.002535 0.1727 b1879 flhA -12.13 0.054078 218 -- 247 64 -- 89 putative flagellar export pore protein  
31 0.001682 0.1727 b1887 cheW -12.93 0.037697 13 -- 28 70 -- 86 purine-binding chemotaxis protein  
70 0.003478 0.1727 b1919 dcyD -7.16 0.432573 249 -- 279 53 -- 83 D-cysteine desulfhydrase PLP-dependent  
132 0.007501 0.1993 b1947 fliO -6.89 0.474041 212 -- 250 53 -- 93 flagellar biosynthesis protein  
25 0.001541 0.1727 b1948 fliP -12.25 0.051366 190 -- 216 44 -- 71 flagellar biosynthesis protein  
164 0.009677 0.2068 b1956 yedQ -11.74 0.064514 187 -- 209 18 -- 41 putative membrane-anchored diguanylate cyclase  
10 0.0003497 0.1198 b2023 hisH -14.83 0.015853 226 -- 277 39 -- 86 imidazole glycerol phosphate synthase glutamine amidotransferase subunit  
143 0.008308 0.2033 b2049 cpsB -11.81 0.062535 184 -- 242 25 -- 78 mannose-1-phosphate guanyltransferase  
57 0.002848 0.1727 b2059 wcaA -10.75 0.100075 282 -- 295 72 -- 85 putative glycosyl transferase  
85 0.004761 0.1855 b2077 iceT -11.46 0.073016 53 -- 74 64 -- 86 putative citrate/iron-citrate/zinc-citrate efflux transporter  
160 0.009416 0.2062 b2095 gatZ -8.10 0.305092 155 -- 170 18 -- 33 D-tagatose 1 6-bisphosphate aldolase 2 subunit b3132
4 3.471e-06 0.003055 b2099 yegU -19.38 0.001997 173 -- 198 64 -- 88 ADP-ribosylglycohydrolase family protein  
3 3.071e-06 0.003055 b2100 yegV -9.35 0.183884 5 -- 14 51 -- 60 putative kinase  
90 0.004828 0.1855 b2149 mglA -7.32 0.409352 216 -- 239 61 -- 86 methyl-galactoside ABC transporter ATPase  
41 0.002142 0.1727 b2153 folE -10.82 0.097170 217 -- 276 53 -- 121 GTP cyclohydrolase I  
16 0.0007867 0.1666 b2178 yejB -12.57 0.044336 179 -- 196 66 -- 82 microcin C ABC transporter permease  
136 0.007706 0.1993 b2188 yejM -8.60 0.250530 107 -- 119 70 -- 83 essential inner membrane DUF3413 domain-containing protein; lipid A production and membrane permeability factor  
133 0.007533 0.1993 b2194 ccmH -11.64 0.067570 191 -- 199 1 -- 9 heme lyase CcmH subunit  
37 0.002023 0.1727 b2197 ccmE -14.61 0.017549 166 -- 218 48 -- 94 periplasmic heme chaperone  
48 0.002388 0.1727 b2198 ccmD -12.59 0.043972 250 -- 282 36 -- 77 cytochrome c biogenesis protein; heme export ABC transporter holo-CcmE release factor  
88 0.004799 0.1855 b2213 ada -9.32 0.185618 222 -- 245 63 -- 86 fused DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase  
43 0.002187 0.1727 b2222 atoA -7.38 0.400797 260 -- 273 68 -- 82 acetyl-CoA:acetoacetyl-CoA transferase beta subunit  
18 0.001002 0.1727 b2284 nuoF -9.91 0.144715 4 -- 28 1 -- 36 NADH:ubiquinone oxidoreductase chain F  
14 0.0004762 0.1198 b2286 nuoC -13.55 0.028468 156 -- 179 68 -- 87 NADH:ubiquinone oxidoreductase fused CD subunit  
53 0.002649 0.1727 b2289 lrhA -9.83 0.149509 112 -- 119 68 -- 75 transcriptional repressor of flagellar motility and chemotaxis genes  
51 0.002608 0.1727 b2299 yfcD -9.22 0.194301 162 -- 171 49 -- 58 putative NUDIX hydrolase  
40 0.002113 0.1727 b2314 dedD -12.04 0.056230 10 -- 25 1 -- 19 membrane-anchored periplasmic protein involved in septation  
69 0.003463 0.1727 b2346 mlaA -10.50 0.111973 167 -- 195 66 -- 86 ABC transporter maintaining OM lipid asymmetry OM lipoprotein component  
169 0.01004 0.2071 b2384 ypdE -12.38 0.048278 93 -- 137 31 -- 75 aminopeptidase b4305 b3898
77 0.00398 0.182 b2411 ligA -14.36 0.019662 79 -- 95 70 -- 86 DNA ligase NAD(+)-dependent  
177 0.01048 0.208 b2416 ptsI -10.21 0.127224 180 -- 212 6 -- 36 PEP-protein phosphotransferase of PTS system (enzyme I)  
100 0.00547 0.1855 b2451 eutA -10.77 0.099200 8 -- 32 56 -- 86 reactivating factor for ethanolamine ammonia lyase  
193 0.01192 0.2159 b2453 eutG -10.04 0.136932 27 -- 40 17 -- 30 ethanol dehydrogenase involved in ethanolamine utilization; aldehyde reductase  
19 0.001118 0.1727 b2455 eutE -12.39 0.048028 37 -- 59 68 -- 89 aldehyde oxidoreductase ethanolamine utilization protein  
55 0.002731 0.1727 b2480 bcp -8.89 0.222722 156 -- 187 28 -- 56 peroxiredoxin; thiol peroxidase thioredoxin-dependent  
15 0.000767 0.1666 b2497 uraA -16.56 0.007223 161 -- 232 28 -- 90 uracil permease  
74 0.003792 0.1804 b2520 yfhM -12.28 0.050623 263 -- 298 53 -- 91 bacterial alpha2-macroglobulin colonization factor ECAM; anti-host protease defense factor; periplasmic inner membrane-anchored lipoprotein  
21 0.001192 0.1727 b2526 hscA -14.48 0.018641 235 -- 259 63 -- 88 DnaK-like molecular chaperone specific for IscU  
124 0.006738 0.1913 b2533 suhB -10.44 0.114821 158 -- 166 51 -- 59 inositol monophosphatase  
36 0.001988 0.1727 b2573 rpoE -9.66 0.161217 247 -- 255 64 -- 72 RNA polymerase sigma E factor  
64 0.003238 0.1727 b2578 eamB -8.70 0.240388 240 -- 262 70 -- 85 cysteine and O-acetylserine exporter  
65 0.003263 0.1727 b2584 pka -7.67 0.359085 49 -- 62 69 -- 82 protein lysine acetyltransferase  
192 0.01187 0.2159 b2600 tyrA -9.34 0.184498 136 -- 155 70 -- 86 fused chorismate mutase T/prephenate dehydrogenase  
154 0.009082 0.2059 b2676 nrdF -13.94 0.023769 159 -- 176 53 -- 69 ribonucleoside-diphosphate reductase 2 beta subunit ferritin-like protein  
156 0.009123 0.2059 b2683 ygaH -13.79 0.025463 164 -- 213 27 -- 86 putative L-valine exporter norvaline resistance protein  
94 0.005015 0.1855 b2703 srlE -7.35 0.404948 254 -- 271 70 -- 86 glucitol/sorbitol-specific enzyme IIB component of PTS  
59 0.002989 0.1727 b2713 hydN -12.16 0.053402 276 -- 298 54 -- 76 formate dehydrogenase-H [4Fe-4S] ferredoxin subunit b3573
52 0.002619 0.1727 b2720 hycF -12.75 0.040951 8 -- 55 44 -- 94 formate hydrogenlyase complex iron-sulfur protein  
103 0.005609 0.1855 b2912 fau -11.92 0.059425 103 -- 124 64 -- 85 5-formyltetrahydrofolate cyclo-ligase family protein  
126 0.006849 0.1914 b2930 yggF -13.28 0.032133 176 -- 191 68 -- 83 fructose 1 6 bisphosphatase isozyme  
125 0.006795 0.1914 b3003 yghA -11.52 0.071261 264 -- 274 70 -- 80 putative oxidoreductase b2902
115 0.006085 0.1855 b3030 parE -11.34 0.077071 10 -- 31 65 -- 86 DNA topoisomerase IV subunit B  
97 0.005188 0.1855 b3060 ttdR -16.80 0.006462 125 -- 147 67 -- 90 transcriptional activator of ttdABT b1799
149 0.008735 0.2059 b3088 alx -8.37 0.274530 278 -- 288 25 -- 35 putative membrane-bound redox modulator  
12 0.0004488 0.1198 b3133 agaV -20.63 0.001136 94 -- 118 64 -- 86 N-acetylgalactosamine-specific enzyme IIB component of PTS  
134 0.007678 0.1993 b3139 agaC -7.83 0.338422 255 -- 275 57 -- 74 N-acetylgalactosamine-specific enzyme IIC component of PTS  
11 0.0004411 0.1198 b3154 yhbP -10.16 0.129625 138 -- 186 18 -- 75 UPF0306 family protein  
86 0.004777 0.1855 b3157 yhbT -11.83 0.061936 277 -- 294 70 -- 85 SCP-2 sterol transfer family protein  
144 0.008344 0.2033 b3159 yhbV -10.12 0.132236 144 -- 228 15 -- 82 U32 peptidase family protein  
68 0.00345 0.1727 b3168 infB -10.64 0.105292 126 -- 148 49 -- 77 translation initiation factor IF-2  
95 0.005084 0.1855 b3182 dacB -12.18 0.052827 253 -- 263 2 -- 12 D-alanyl-D-alanine carboxypeptidase  
91 0.004841 0.1855 b3194 mlaE -9.16 0.198986 180 -- 189 67 -- 76 ABC transporter maintaining OM lipid asymmetry inner membrane permease protein  
54 0.002681 0.1727 b3201 lptB -14.37 0.019597 275 -- 293 64 -- 82 lipopolysaccharide export ABC transporter ATPase  
1 0 0 b3209 elbB -118.30 0.000000 1 -- 83 1 -- 83 isoprenoid biosynthesis protein with amidotransferase-like domain  
140 0.008117 0.2031 b3221 yhcH -13.19 0.033484 158 -- 212 34 -- 73 DUF386 family protein cupin superfamily  
190 0.01143 0.2119 b3233 yhcB -11.72 0.064941 161 -- 178 66 -- 81 DUF1043 family inner membrane-anchored protein  
186 0.01109 0.2089 b3234 degQ -11.96 0.058310 267 -- 277 3 -- 13 serine endoprotease periplasmic  
39 0.002105 0.1727 b3249 mreD -13.67 0.026871 102 -- 115 74 -- 87 cell wall structural complex MreBCD transmembrane component MreD  
78 0.004296 0.1855 b3258 panF -10.37 0.118507 142 -- 153 52 -- 62 pantothenate:sodium symporter  
173 0.01023 0.2071 b3297 rpsK -11.54 0.070538 32 -- 43 48 -- 59 30S ribosomal subunit protein S11  
81 0.004478 0.1855 b3327 gspF -8.77 0.233220 243 -- 251 26 -- 34 general secretory pathway component cryptic  
157 0.009216 0.2062 b3361 fic -9.77 0.153316 103 -- 112 5 -- 14 stationary phase-induced protein putative toxin  
129 0.007194 0.1964 b3401 hslO -8.25 0.287762 98 -- 107 1 -- 10 heat shock protein Hsp33  
141 0.008132 0.2031 b3412 bioH -10.51 0.111302 230 -- 255 56 -- 74 pimeloyl-ACP methyl ester carboxylesterase  
189 0.01136 0.2116 b3413 gntX -9.78 0.152759 211 -- 235 52 -- 76 DNA catabolic protein  
60 0.003031 0.1727 b3432 glgB -10.57 0.108575 114 -- 123 51 -- 60 1 4-alpha-glucan branching enzyme  
107 0.005754 0.1855 b3447 ggt -8.41 0.270031 252 -- 270 52 -- 70 gamma-glutamyltranspeptidase  
49 0.00252 0.1727 b3452 ugpA -14.40 0.019328 59 -- 78 52 -- 70 sn-glycerol-3-phosphate ABC transporter permease  
194 0.01194 0.2159 b3454 livF -10.01 0.138607 25 -- 47 72 -- 86 branched-chain amino acid ABC transporter ATPase  
142 0.00825 0.2033 b3457 livH -8.25 0.287512 56 -- 64 3 -- 11 branched-chain amino acid ABC transporter permease  
153 0.009069 0.2059 b3529 yhjK -8.15 0.299018 186 -- 212 47 -- 74 cyclic-di-GMP phosphodiesterase  
73 0.003782 0.1804 b3560 glyQ -10.80 0.098141 7 -- 31 51 -- 74 glycine tRNA synthetase alpha subunit  
158 0.009324 0.2062 b3574 yiaJ -10.56 0.109206 175 -- 190 70 -- 85 transcriptional repressor for the yiaKLMNO-lyxK-sgbHUE operon  
80 0.004451 0.1855 b3578 yiaN -12.19 0.052777 198 -- 212 52 -- 66 2 3-diketo-L-gulonate TRAP transporter large permease protein  
178 0.01053 0.208 b3582 sgbU -5.91 0.640260 169 -- 196 65 -- 84 putative L-xylulose 5-phosphate 3-epimerase  
32 0.001707 0.1727 b3606 trmL -13.76 0.025837 263 -- 277 71 -- 85 tRNA Leu mC34 mU34 2'-O-methyltransferase SAM-dependent  
30 0.001614 0.1727 b3607 cysE -13.31 0.031682 13 -- 32 63 -- 81 serine acetyltransferase  
159 0.009346 0.2062 b3661 nlpA -7.63 0.365650 232 -- 240 1 -- 9 cytoplasmic membrane lipoprotein-28  
92 0.004911 0.1855 b3732 atpD -9.01 0.211333 117 -- 128 1 -- 11 F1 sector of membrane-bound ATP synthase beta subunit  
2 1.572e-09 2.767e-06 b3749 rbsA -20.95 0.000983 43 -- 64 65 -- 86 D-ribose ABC transporter ATPase  
146 0.008611 0.2059 b3750 rbsC -8.88 0.223197 137 -- 159 56 -- 77 D-ribose ABC transporter permease  
109 0.005919 0.1855 b3807 cyaY -12.33 0.049473 23 -- 64 29 -- 73 iron-dependent inhibitor of iron-sulfur cluster formation; frataxin; iron-binding and oxidizing protein  
62 0.003053 0.1727 b3812 yigB -11.80 0.062766 182 -- 199 65 -- 83 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase; pyrimidine phosphatase; riboflavin synthesis  
131 0.007315 0.1966 b3824 rhtB -9.48 0.174149 77 -- 100 63 -- 87 homoserine homoserine lactone and S-methyl-methionine efflux pump  
119 0.006508 0.1913 b3834 ubiJ -9.73 0.156135 145 -- 181 28 -- 78 aerobic ubiquinone synthesis protein SCP2 family protein  
6 0.0001378 0.08054 b3860 dsbA -12.69 0.042007 89 -- 111 55 -- 75 periplasmic protein disulfide isomerase I  
170 0.01004 0.2071 b3887 dtd -7.24 0.420466 57 -- 66 52 -- 62 D-tyr-tRNA(Tyr) deacylase  
108 0.005783 0.1855 b3951 pflD -15.90 0.009733 233 -- 258 63 -- 86 putative glycine radical domain-containing pyruvate formate-lyase b0823
138 0.007886 0.2012 b3991 thiG -13.21 0.033127 237 -- 259 64 -- 85 thiamine biosynthesis ThiGH complex subunit  
137 0.007754 0.1993 b4024 lysC -8.53 0.257132 131 -- 141 73 -- 85 lysine-sensitive aspartokinase 3  
71 0.003482 0.1727 b4046 zur -8.96 0.216158 254 -- 300 53 -- 94 transcriptional repressor Zn(II)-binding  
127 0.007097 0.1961 b4065 yjcE -10.62 0.105957 81 -- 91 51 -- 62 putative cation/proton antiporter  
171 0.01011 0.2071 b4086 alsC -10.38 0.118114 189 -- 207 53 -- 70 D-allose ABC transporter permease  
163 0.009572 0.2068 b4126 yjdI -8.84 0.226749 182 -- 194 26 -- 41 putative 4Fe-4S mono-cluster protein  
46 0.002359 0.1727 b4139 aspA -15.43 0.012067 239 -- 273 37 -- 76 aspartate ammonia-lyase  
82 0.004565 0.1855 b4144 yjeI -10.12 0.132253 163 -- 240 1 -- 93 DUF4156 family lipoprotein  
162 0.009519 0.2068 b4167 nnr -8.70 0.240671 167 -- 176 76 -- 85 bifunctional NAD(P)H-hydrate repair enzyme; C-terminal domain ADP-dependent (S)-NAD(P)H-hydrate dehydratase and N-terminal domain NAD(P)H-hydrate epimerase  
98 0.005208 0.1855 b4174 hflK -10.42 0.116019 265 -- 284 65 -- 83 modulator for HflB protease specific for phage lambda cII repressor  
191 0.01171 0.2159 b4221 tamB -9.06 0.207346 81 -- 101 52 -- 76 translocation and assembly module for autotransporter export inner membrane subunit  
89 0.004811 0.1855 b4336 yjiN -13.14 0.034257 120 -- 134 70 -- 84 zinc-type alcohol dehydrogenase-like protein  
29 0.001588 0.1727 b4371 rsmC -11.43 0.073969 145 -- 160 74 -- 89 16S rRNA m(2)G1207 methyltransferase SAM-dependent  
188 0.01115 0.2089 b4377 yjjU -9.16 0.198952 213 -- 243 51 -- 77 putative patatin-like family phospholipase  
34 0.001871 0.1727 b4485 ytfR -15.36 0.012458 204 -- 227 64 -- 86 putative sugar ABC transporter ATPase  
180 0.01069 0.2089 b4529 ydbJ -7.20 0.426635 222 -- 243 41 -- 61 DUF333 family putative lipoprotein  

Details of Selected Interaction Download Interaction Details 

mRNA

sRNA


		

		

		

		
		

			

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
			

			

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
			

		
 
		
		

		
		

		
		
		
		
Evolutionary conservation of mRNA targets
			(alignment generated with
			Jalview)

		
		
		
Evolutionary conservation of sRNA
			(alignment generated with
			Jalview)

		
		
		

		
	

	
	
	

	
	
	




			 
	





	
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Results are computed with CopraRNA version 2.1.2



		 
	

			





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